Soybean mGWAS DB

Explore metabolite–gene associations from soybean metabolome GWAS results. This database supports bidirectional navigation between metabolites and genes, with linked detail pages for association evidence and mass-based compound candidates.

How to explore the database →

SNP and gene associations use P < 10⁻¹⁰. Change threshold · Counts cover features with indexed GWAS data; — means unavailable.

Explore by Metabolite

Search metabolites by metabolite ID or candidate names, formulas or compound IDs.

Metabolite ID Candidate annotation Deionized mass (Da) Average m/z Associated genes (overlap)
P00589 Lykurim 364.0967 365.1018 159
P00715 Loviride 350.0610 351.0678 159
P03958 Asperpyrone A 572.1410 573.1433 159
P05872 Formebolone 344.2031 345.2088 159
P08490 Torokonine 449.2231 450.2264 159
P10909 7-(3-((3-Formylphenoxy)methyl)-1,5-dimethyl-1H-pyrazol-4-yl)-3-(3-(naphthalen-1-yloxy)propyl)-1H-indole-2-carboxylic acid 573.2300 574.2360 159
P13378 (L-Threonyl)adenylate 448.1096 449.1147 159
P17048 761.2212 762.2314 159
P19069 353.5640 354.5707 159
P29235 467.7279 468.7315 159

Explore by Gene

Search genes by gene ID, alias, description, or Arabidopsis ortholog information.

Gene ID Alias Description Arabidopsis ortholog Associated metabolites (overlap)
Glyma.16G069300 hypothetical protein AT3G01600:NAC044:NAC domain containing protein 44 98
Glyma.19G195600 hypothetical protein AT3G52570:AT3G52570:alpha/beta-Hydrolases superfamily protein 98
Glyma.20G034000 hypothetical protein AT2G03060:AGL30:AGAMOUS-like 30 98
Glyma.03G007800 hypothetical protein AT4G26010:AT4G26010:Peroxidase superfamily protein 97
Glyma.06G211700 hypothetical protein NA 97
Glyma.16G138400 hypothetical protein NA 97
Glyma.16G145500 hypothetical protein AT2G39200:MLO12:Seven transmembrane MLO family protein 97
Glyma.18G197500 hypothetical protein NA 97
Glyma.06G175200 SEOd NA 96
Glyma.08G039600 hypothetical protein NA 96