Soybean mGWAS DB

Explore metabolite–gene associations from soybean metabolome GWAS results. This database supports bidirectional navigation between metabolites and genes, with linked detail pages for association evidence and mass-based compound candidates.

How to explore the database →

SNP and gene associations use P < 10⁻¹⁰. Change threshold · Counts cover features with indexed GWAS data; — means unavailable.

Explore by Metabolite

Search metabolites by metabolite ID or candidate names, formulas or compound IDs.

Metabolite ID Candidate annotation Deionized mass (Da) Average m/z Associated genes (overlap)
P54904 607.0573 608.0659 —
P54906 332.5783 333.5864 —
P54910 (9aS)-6S-(deca-1,3E-dienyl)-4S-methyloctahydro-1H-quinolizin-3R-ol 305.2694 306.2761 —
P54914 Nicarbazin 302.0662 303.0742 —
P54915 (7E)-(1R,3R)-26,26,26,27,27,27-hexafluoro-19-nor-9,10-seco-5,7,16-cholestatrien-23-yne-1,3,25-triol 506.2257 507.2300 —
P54918 Edulirin B 644.2654 645.2746 —
P54922 LysoPC(6:0/0:0) 355.1756 356.1834 —
P54923 275.9093 276.9181 —
P54926 527.1414 528.1520 —
P54927 N-Arachidonoyl Methionine 435.2849 436.2921 —

Explore by Gene

Search genes by gene ID, alias, description, or Arabidopsis ortholog information.

Gene ID Alias Description Arabidopsis ortholog Associated metabolites (overlap)
Glyma.09G167000 hypothetical protein NA 100
Glyma.09G210700 hypothetical protein AT1G31970:STRS1:DEA(D/H)-box RNA helicase family protein 100
Glyma.06G211800 hypothetical protein NA 99
Glyma.10G229600 hypothetical protein AT4G23630:BTI1:VIRB2-interacting protein 1 99
Glyma.10G257500 hypothetical protein NA 99
Glyma.12G007800 hypothetical protein NA 99
Glyma.18G252100 hypothetical protein AT1G02090:FUS5:Proteasome component (PCI) domain protein 99
Glyma.20G107000 hypothetical protein NA 99
Glyma.09G252400 hypothetical protein NA 98
Glyma.14G177100 hypothetical protein AT1G22450:COX6B:cytochrome C oxidase 6B 98