Soybean mGWAS DB

Explore metabolite–gene associations from soybean metabolome GWAS results. This database supports bidirectional navigation between metabolites and genes, with linked detail pages for association evidence and mass-based compound candidates.

How to explore the database →

SNP and gene associations use P < 10⁻¹⁰. Change threshold · Counts cover features with indexed GWAS data; — means unavailable.

Explore by Metabolite

Search metabolites by metabolite ID or candidate names, formulas or compound IDs.

Metabolite ID Candidate annotation Deionized mass (Da) Average m/z Associated genes (overlap)
P07144 Diguanosine diphosphate 708.1155 709.1216 121
P07500 Diaveridine 260.1291 261.1357 121
P07947 Valylproline 214.1297 215.1368 121
P08647 5-Deoxy-5-aminoshikimic acid 173.0699 174.0765 121
P13231 Atromentin 324.0635 325.0717 121
P19235 (-)-Oriciacridone A 636.2152 637.2192 121
P27981 Notoamide G 477.2233 478.2307 121
P29119 Validamycin E 659.2616 660.2707 121
P30744 Nifekalant 405.2011 406.2077 121
P33280 (-)-Morphinan 227.1650 228.1726 121

Explore by Gene

Search genes by gene ID, alias, description, or Arabidopsis ortholog information.

Gene ID Alias Description Arabidopsis ortholog Associated metabolites (overlap)
Glyma.08G338200 hypothetical protein NA 112
Glyma.08G338600 hypothetical protein NA 112
Glyma.09G272300 hypothetical protein AT5G01950:AT5G01950:Leucine-rich repeat protein kinase family protein 112
Glyma.09G272800 hypothetical protein AT3G08670:AT3G08670:serine/arginine repetitive matrix-like protein 112
Glyma.16G111200 hypothetical protein AT5G65930:ZWI:kinesin-like calmodulin-binding protein (ZWICHEL) 112
Glyma.11G062400 hypothetical protein AT4G36860:AT4G36860:LIM domain-containing protein 111
Glyma.02G151500 hypothetical protein AT2G47990:SWA1:transducin family protein / WD-40 repeat family protein 110
Glyma.02G294900 hypothetical protein AT5G55220:AT5G55220:trigger factor type chaperone family protein 110
Glyma.02G295000 hypothetical protein AT4G26770:AT4G26770:Phosphatidate cytidylyltransferase family protein 110
Glyma.05G182900 hypothetical protein NA 110