Soybean mGWAS DB

Explore metabolite–gene associations from soybean metabolome GWAS results. This database supports bidirectional navigation between metabolites and genes, with linked detail pages for association evidence and mass-based compound candidates.

How to explore the database →

SNP and gene associations use P < 10⁻¹⁰. Change threshold · Counts cover features with indexed GWAS data; — means unavailable.

Explore by Metabolite

Search metabolites by metabolite ID or candidate names, formulas or compound IDs.

Metabolite ID Candidate annotation Deionized mass (Da) Average m/z Associated genes (overlap)
P13327 alpha-D-GalpNAc-(1->3)-[alpha-L-Fucp-(1->2)]-D-Galp 529.2044 530.2108 155
P13500 15alpha-acetoxy-16beta,17beta-epoxy-6beta,14beta-dihydroxy-1-oxo-2alpha,5alpha-dioxy-witha3,24-dien-26,22-olide 558.2473 559.2531 155
P17449 Malonylshisonin 842.2068 843.2170 155
P23102 N-(3-hydroxy-heptanoyl)-homoserine lactone 229.1303 230.1369 155
P24676 1-O-(2-Amino-2-deoxy-alpha-D-glucopyranosyl)-1D-myo-inositol 341.1319 342.1398 155
P35412 4,5-Dihydro-drospirenone-3-sulfate 434.2180 435.2256 155
P38939 5,7-octadienoic acid 140.0825 281.1728 155
P40935 259.2097 260.2178 155
P40997 (-)-Sonderianol 298.1892 299.1941 155
P43802 Tetracenomycin E 408.0825 409.0894 155

Explore by Gene

Search genes by gene ID, alias, description, or Arabidopsis ortholog information.

Gene ID Alias Description Arabidopsis ortholog Associated metabolites (overlap)
Glyma.10G082200 hypothetical protein NA 119
Glyma.13G134000 hypothetical protein NA 119
Glyma.17G137100 hypothetical protein AT4G22860:AT4G22860:Cell cycle regulated microtubule associated protein 119
Glyma.18G266200 hypothetical protein NA 119
Glyma.09G062200 hypothetical protein AT2G19350:AT2G19350:transmembrane protein (DUF872) 118
Glyma.12G193800 hypothetical protein AT2G05710:ACO3:aconitase 3 118
Glyma.13G319600 hypothetical protein AT5G22740:CSLA02:cellulose synthase-like A02 118
Glyma.18G044900 hypothetical protein AT1G66120:AAE11:AMP-dependent synthetase and ligase family protein__AT1G68270:AT1G68270:AMP-dependent synthetase and ligase family protein 118
Glyma.20G022500 hypothetical protein NA 117
Glyma.08G182400 hypothetical protein NA 116