Soybean mGWAS DB

Explore metabolite–gene associations from soybean metabolome GWAS results. This database supports bidirectional navigation between metabolites and genes, with linked detail pages for association evidence and mass-based compound candidates.

How to explore the database →

SNP and gene associations use P < 10⁻¹⁰. Change threshold · Counts cover features with indexed GWAS data; — means unavailable.

Explore by Metabolite

Search metabolites by metabolite ID or candidate names, formulas or compound IDs.

Metabolite ID Candidate annotation Deionized mass (Da) Average m/z Associated genes (overlap)
P43458 818.8998 819.9076 246
P00033 199.9632 200.9692 245
P15417 577.2031 578.2139 244
P41628 Cortolone-3-glucuronide 542.2743 543.2807 243
P09386 2-Methyl-5-vinylpyrazine 120.0674 121.0744 242
P22199 Homaline 490.3360 491.3421 241
P36928 Ligujapone 202.0983 203.1053 241
P39358 5,6-Dehydroalbine 230.1386 461.2870 241
P41069 DG(2:0/22:6(4Z,8Z,10Z,13Z,16Z,19Z)-OH(7)/0:0) 460.2787 461.2856 241
P35092 314.6285 315.6348 240

Explore by Gene

Search genes by gene ID, alias, description, or Arabidopsis ortholog information.

Gene ID Alias Description Arabidopsis ortholog Associated metabolites (overlap)
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 2,222
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 2,180
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 2,080
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 2,080
Glyma.16G196900 hypothetical protein NA 2,052
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1,955
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1,948
Glyma.10G079800 hypothetical protein NA 1,939
Glyma.10G081200 hypothetical protein NA 1,939
Glyma.10G078700 hypothetical protein NA 1,935