Soybean mGWAS DB

Explore metabolite–gene associations from soybean metabolome GWAS results. This database supports bidirectional navigation between metabolites and genes, with linked detail pages for association evidence and mass-based compound candidates.

How to explore the database →

SNP and gene associations use P < 10⁻¹⁰. Change threshold · Counts cover features with indexed GWAS data; — means unavailable.

Explore by Metabolite

Search metabolites by metabolite ID or candidate names, formulas or compound IDs.

Metabolite ID Candidate annotation Deionized mass (Da) Average m/z Associated genes (overlap)
P52734 Bialaphos 323.1245 324.1307 101
P01015 Oxaburimamide 214.0929 215.1009 100
P01041 482.0337 483.0418 100
P02048 L-Glutamyl 5-phosphate 227.0189 228.0268 100
P04048 4-Nitroquinoline N-oxide 190.0393 191.0467 100
P04164 Elinafide 520.2115 521.2193 100
P08546 169.0440 170.0507 100
P09036 Delmadinone 360.1485 361.1545 100
P09294 2-Methoxybenzoic acid 152.0462 153.0536 100
P10487 Quercetin 3-(6'''-sinapylglucosyl)(1->2)-galactoside 832.2090 833.2224 100

Explore by Gene

Search genes by gene ID, alias, description, or Arabidopsis ortholog information.

Gene ID Alias Description Arabidopsis ortholog Associated metabolites (overlap)
Glyma.05G124700 hypothetical protein NA 2,364
Glyma.08G123500 hypothetical protein NA 2,347
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 2,327
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 2,309
Glyma.08G122500 hypothetical protein NA 2,303
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 2,290
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 2,276
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2,254
Glyma.19G027000 hypothetical protein NA 2,247
Glyma.14G149300 hypothetical protein NA 2,225