Soybean mGWAS DB

Explore metabolite–gene associations from soybean metabolome GWAS results. This database supports bidirectional navigation between metabolites and genes, with linked detail pages for association evidence and mass-based compound candidates.

How to explore the database →

SNP and gene associations use P < 10⁻¹⁰. Change threshold · Counts cover features with indexed GWAS data; — means unavailable.

Explore by Metabolite

Search metabolites by metabolite ID or candidate names, formulas or compound IDs.

Metabolite ID Candidate annotation Deionized mass (Da) Average m/z Associated genes (overlap)
P23451 607.2766 608.2820 221
P05770 1-Methylpiperidin-4-yl butanoate 185.1403 186.1473 220
P09835 10-Formyldihydrofolate 471.1494 472.1544 220
P10595 317.1915 318.1977 220
P12478 5,7-octadienoic acid 140.0839 141.0905 220
P19868 Cohaerin C 482.2267 483.2355 220
P30782 Cryptostigmin IV 1030.4967 1031.5022 220
P40362 BL V 424.0812 425.0898 220
P44001 839.4221 840.4307 220
P05350 Methylinoscavin B 450.1344 451.1421 219

Explore by Gene

Search genes by gene ID, alias, description, or Arabidopsis ortholog information.

Gene ID Alias Description Arabidopsis ortholog Associated metabolites (overlap)
Glyma.15G049000 hypothetical protein NA 176
Glyma.15G275100 hypothetical protein AT5G42470:AT5G42470:BRCA1-A complex subunit BRE-like protein 176
Glyma.16G024800 hypothetical protein AT4G31010:AT4G31010:RNA-binding CRS1 / YhbY (CRM) domain-containing protein 176
Glyma.09G056300 hypothetical protein NA 175
Glyma.11G118200 hypothetical protein NA 175
Glyma.19G125400 hypothetical protein AT3G12390:AT3G12390:Nascent polypeptide-associated complex (NAC), alpha subunit family protein 174
Glyma.08G296900 hypothetical protein NA 172
Glyma.15G139000 hypothetical protein NA 172
Glyma.08G147400 hypothetical protein AT1G48870:AT1G48870:Transducin/WD40 repeat-like superfamily protein 171
Glyma.20G217700 hypothetical protein AT1G32810:AT1G32810:RING/FYVE/PHD zinc finger superfamily protein 171