Soybean mGWAS DB

Explore metabolite–gene associations from soybean metabolome GWAS results. This database supports bidirectional navigation between metabolites and genes, with linked detail pages for association evidence and mass-based compound candidates.

How to explore the database →

SNP and gene associations use P < 10⁻¹⁰. Change threshold · Counts cover features with indexed GWAS data; — means unavailable.

Explore by Metabolite

Search metabolites by metabolite ID or candidate names, formulas or compound IDs.

Metabolite ID Candidate annotation Deionized mass (Da) Average m/z Associated genes (overlap)
P03225 Chlorambucil-tertiary butyl ester 359.1400 360.1461 210
P05139 310.6259 311.6315 210
P27684 309.2743 310.2795 210
P04549 Cyclosulfamuron 421.1071 422.1091 209
P13108 Bms-707035 410.1081 411.1142 209
P14970 Benzonaphthazepine 243.1062 244.1135 209
P44253 285.6155 286.6223 209
P50982 Oleamide 281.2671 282.2752 209
P16775 PA(10:0/13:0) 522.3343 523.3435 208
P20730 1-dodecanoyl-glycero-3-phospho-(1'-myo-inositol) 516.2330 517.2397 208

Explore by Gene

Search genes by gene ID, alias, description, or Arabidopsis ortholog information.

Gene ID Alias Description Arabidopsis ortholog Associated metabolites (overlap)
Glyma.20G106800 hypothetical protein AT4G38520:AT4G38520:Protein phosphatase 2C family protein__AT3G51370:AT3G51370:Protein phosphatase 2C family protein 213
Glyma.03G136000 hypothetical protein NA 211
Glyma.09G202900 hypothetical protein AT5G10560:AT5G10560:Glycosyl hydrolase family protein 211
Glyma.13G224800 hypothetical protein NA 210
Glyma.06G126400 hypothetical protein AT5G53150:AT5G53150:DnaJ heat shock amino-terminal domain protein 208
Glyma.11G183800 hypothetical protein AT5G22450:AT5G22450:spectrin beta chain, brain 208
Glyma.12G054500 hypothetical protein NA 208
Glyma.14G082300 hypothetical protein AT5G42750:BKI1:BRI1 kinase inhibitor 1 207
Glyma.02G296300 hypothetical protein AT5G55400:AT5G55400:Actin binding Calponin homology (CH) domain-containing protein 206
Glyma.04G014300 hypothetical protein AT1G20880:AT1G20880:RNA-binding (RRM/RBD/RNP motifs) family protein 206