Soybean mGWAS DB

Explore metabolite–gene associations from soybean metabolome GWAS results. This database supports bidirectional navigation between metabolites and genes, with linked detail pages for association evidence and mass-based compound candidates.

How to explore the database →

SNP and gene associations use P < 10⁻¹⁰. Change threshold · Counts cover features with indexed GWAS data; — means unavailable.

Explore by Metabolite

Search metabolites by metabolite ID or candidate names, formulas or compound IDs.

Metabolite ID Candidate annotation Deionized mass (Da) Average m/z Associated genes (overlap)
P10446 Euchrenone a14 472.2284 473.2320 168
P13647 982.2182 983.2289 168
P13935 Malvidin 3-glucoside-5-(6-acetylglucoside) 698.1805 699.1815 168
P19115 Israpafant 488.1842 489.1914 168
P22796 Argylioside 704.2463 705.2566 168
P33387 Altretamine 210.1598 211.1668 168
P37674 Blebbistatin 292.1218 293.1314 168
P42321 N3-Cyclopropyl-7-[(4-propan-2-ylphenyl)methyl]pyrrolo[3,2-f]quinazoline-1,3-diamine 371.2129 743.4342 168
P45697 Cadalene 198.1396 199.1481 168
P06307 915.2578 916.2666 167

Explore by Gene

Search genes by gene ID, alias, description, or Arabidopsis ortholog information.

Gene ID Alias Description Arabidopsis ortholog Associated metabolites (overlap)
Glyma.08G118500 hypothetical protein NA 232
Glyma.09G252000 hypothetical protein AT2G40730:CTEXP:kinase family with ARM repeat domain-containing protein 232
Glyma.14G013500 hypothetical protein AT4G25434:NUDT10:nudix hydrolase homolog 10 232
Glyma.11G162500 hypothetical protein AT2G40435:AT2G40435:transcription factor SCREAM-like protein 231
Glyma.11G179000 hypothetical protein AT2G27230:LHW:transcription factor-like protein 229
Glyma.19G102000 ICE2 AT3G26744:ICE1:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 229
Glyma.19G102200 hypothetical protein AT2G31410:AT2G31410:coiled-coil protein 229
Glyma.03G036800 TBP1 AT3G13445:TBP1:TATA binding protein 1 228
Glyma.07G068400 hypothetical protein AT1G29320:AT1G29320:Transducin/WD40 repeat-like superfamily protein 227
Glyma.04G237500 hypothetical protein AT5G15940:AT5G15940:NAD(P)-binding Rossmann-fold superfamily protein__AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 226