Soybean mGWAS DB

Explore metabolite–gene associations from soybean metabolome GWAS results. This database supports bidirectional navigation between metabolites and genes, with linked detail pages for association evidence and mass-based compound candidates.

How to explore the database →

SNP and gene associations use P < 10⁻¹⁰. Change threshold · Counts cover features with indexed GWAS data; — means unavailable.

Explore by Metabolite

Search metabolites by metabolite ID or candidate names, formulas or compound IDs.

Metabolite ID Candidate annotation Deionized mass (Da) Average m/z Associated genes (overlap)
P54719 188.9958 190.0025 102
P00511 4-Iodo-2,5-dimethoxyphenethylamine 307.0092 308.0168 101
P00815 N-Vinylpyrrolidine 97.0882 98.0959 101
P01795 benserazide 257.0969 258.1036 101
P02709 (4S)-4-Amino-5-[(2R)-2-amino-3-sulfanylpropanoyl]oxy-5-oxopentanoic acid 250.0620 251.0684 101
P02815 Macromomycin B 249.0683 250.0746 101
P05861 Ethenodeoxyadenosine 275.1027 276.1108 101
P08431 (6S)-6beta-Hydroxy-1,4,5,6-tetrahydronicotinamide-adenine dinucleotide phosphate 763.1053 764.1146 101
P09342 o-Methylacetophenone 134.0724 135.0792 101
P11522 4-Aminophenylacetic acid 151.0620 152.0691 101

Explore by Gene

Search genes by gene ID, alias, description, or Arabidopsis ortholog information.

Gene ID Alias Description Arabidopsis ortholog Associated metabolites (overlap)
Glyma.U030200 hypothetical protein AT4G07410:PCN:Transducin family protein / WD-40 repeat family protein 0
Glyma.U030300 hypothetical protein NA 0
Glyma.U030400 hypothetical protein AT5G25420:AT5G25420:Xanthine/uracil/vitamin C permease 0
Glyma.U030500 hypothetical protein AT1G27461:AT1G27461:uncharacterized protein 0
Glyma.U030600 hypothetical protein NA 0
Glyma.U030700 hypothetical protein AT3G12350:AT3G12350:F-box family protein 0
Glyma.U030800 hypothetical protein AT1G10200:WLIM1:GATA type zinc finger transcription factor family protein 0
Glyma.U030900 hypothetical protein AT1G59590:ZCF37:ZCF37 0
Glyma.U031000 ZCW7 protein AT1G59600:ZCW7:ZCW7 0
Glyma.U031100 hypothetical protein AT5G63905:AT5G63905:uncharacterized protein 0