Soybean mGWAS DB

Explore metabolite–gene associations from soybean metabolome GWAS results. This database supports bidirectional navigation between metabolites and genes, with linked detail pages for association evidence and mass-based compound candidates.

How to explore the database →

SNP and gene associations use P < 10⁻¹⁰. Change threshold · Counts cover features with indexed GWAS data; — means unavailable.

Explore by Metabolite

Search metabolites by metabolite ID or candidate names, formulas or compound IDs.

Metabolite ID Candidate annotation Deionized mass (Da) Average m/z Associated genes (overlap)
P22313 Terpendole J 521.3205 522.3302 119
P22424 Loperamide 476.2217 477.2266 119
P23487 Neoacrimarine-K 559.1779 560.1836 119
P25130 Hypodematine 247.0999 248.1073 119
P25637 trans-p-Ferulyl alcohol 4-O-[6-(2-methyl-3-hydroxypropionyl)] glucopyranoside 428.1667 857.3386 119
P26612 Pradimicin O 563.1473 564.1552 119
P31836 Ethambutol 204.1857 205.1933 119
P34760 Novapikromycin 541.3261 542.3342 119
P34767 (2S)-2-Cyclopentyl-2-[4-[(2,4-dimethylpyrido[2,3-b]indol-9-yl)methyl]phenyl]-N-[(1S)-2-hydroxy-1-phenylethyl]acetamide 531.2973 532.3058 119
P35028 PS(20:5(5Z,8Z,11Z,14Z,17Z)/18:4(6Z,9Z,12Z,15Z)) 801.4653 802.4685 119

Explore by Gene

Search genes by gene ID, alias, description, or Arabidopsis ortholog information.

Gene ID Alias Description Arabidopsis ortholog Associated metabolites (overlap)
Glyma.U030200 hypothetical protein AT4G07410:PCN:Transducin family protein / WD-40 repeat family protein 0
Glyma.U030300 hypothetical protein NA 0
Glyma.U030400 hypothetical protein AT5G25420:AT5G25420:Xanthine/uracil/vitamin C permease 0
Glyma.U030500 hypothetical protein AT1G27461:AT1G27461:uncharacterized protein 0
Glyma.U030600 hypothetical protein NA 0
Glyma.U030700 hypothetical protein AT3G12350:AT3G12350:F-box family protein 0
Glyma.U030800 hypothetical protein AT1G10200:WLIM1:GATA type zinc finger transcription factor family protein 0
Glyma.U030900 hypothetical protein AT1G59590:ZCF37:ZCF37 0
Glyma.U031000 ZCW7 protein AT1G59600:ZCW7:ZCW7 0
Glyma.U031100 hypothetical protein AT5G63905:AT5G63905:uncharacterized protein 0