Soybean mGWAS DB

Explore metabolite–gene associations from soybean metabolome GWAS results. This database supports bidirectional navigation between metabolites and genes, with linked detail pages for association evidence and mass-based compound candidates.

How to explore the database →

SNP and gene associations use P < 10⁻¹⁰. Change threshold · Counts cover features with indexed GWAS data; — means unavailable.

Explore by Metabolite

Search metabolites by metabolite ID or candidate names, formulas or compound IDs.

Metabolite ID Candidate annotation Deionized mass (Da) Average m/z Associated genes (overlap)
P54539 Sophoraflavanone J 650.2518 651.2584 —
P54548 (R)-6-(3-Methylpiperazin-1-yl)nicotinonitrile 202.1257 203.1332 —
P54552 119.0802 120.0872 —
P54557 Styrene 104.0616 105.0687 —
P54565 257.2589 258.2663 —
P54569 128.9610 129.9684 —
P54571 1-(9Z-nonadecenoyl)-glycero-3-phosphate 450.2730 451.2794 —
P54575 109.0076 110.0149 —
P54581 360.8103 361.8184 —
P54587 3-Methoxy-19-norpregna-1,3,5(10)-trien-20-one 312.2077 313.2144 —

Explore by Gene

Search genes by gene ID, alias, description, or Arabidopsis ortholog information.

Gene ID Alias Description Arabidopsis ortholog Associated metabolites (overlap)
Glyma.U029200 hypothetical protein NA 0
Glyma.U029300 hypothetical protein NA 0
Glyma.U029400 hypothetical protein NA 0
Glyma.U029500 hypothetical protein AT1G59530:bZIP4:basic leucine-zipper 4 0
Glyma.U029600 PSK5 NA 0
Glyma.U029700 hypothetical protein NA 0
Glyma.U029800 hypothetical protein NA 0
Glyma.U029900 hypothetical protein AT1G10140:AT1G10140:Uncharacterized conserved protein UCP031279 0
Glyma.U030000 hypothetical protein NA 0
Glyma.U030100 hypothetical protein NA 0