Soybean mGWAS DB

Explore metabolite–gene associations from soybean metabolome GWAS results. This database supports bidirectional navigation between metabolites and genes, with linked detail pages for association evidence and mass-based compound candidates.

How to explore the database →

SNP and gene associations use P < 10⁻¹⁰. Change threshold · Counts cover features with indexed GWAS data; — means unavailable.

Explore by Metabolite

Search metabolites by metabolite ID or candidate names, formulas or compound IDs.

Metabolite ID Candidate annotation Deionized mass (Da) Average m/z Associated genes (overlap)
P54201 L-AMP 607.0368 608.0481 —
P54202 606.9985 608.0043 —
P54204 546.4234 547.4322 —
P54214 605.8717 606.8775 —
P54216 603.1511 604.1590 —
P54217 605.9906 606.9970 —
P54218 2,7-Dideacetyltaxuspine X 682.2949 683.3035 —
P54219 1-(2-methoxy-19Z-hexacosaenyl)-sn-glycero-3-phosphoethanolamine 607.4656 608.4712 —
P54220 Bazzanin O 605.9807 606.9835 —
P54226 280.8923 281.8989 —

Explore by Gene

Search genes by gene ID, alias, description, or Arabidopsis ortholog information.

Gene ID Alias Description Arabidopsis ortholog Associated metabolites (overlap)
Glyma.U027200 hypothetical protein AT3G42670:CHR38:chromatin remodeling 38__AT5G20420:CHR42:chromatin remodeling 42 0
Glyma.U027300 hypothetical protein AT5G01050:AT5G01050:Laccase/Diphenol oxidase family protein 0
Glyma.U027400 hypothetical protein AT5G01040:LAC8:laccase 8 0
Glyma.U027500 hypothetical protein AT3G09230:MYB1:myb domain protein 1 0
Glyma.U027600 hypothetical protein NA 0
Glyma.U027700 BSK6 AT3G54030:BSK6:kinase with tetratricopeptide repeat domain-containing protein 0
Glyma.U027800 hypothetical protein NA 0
Glyma.U027900 hypothetical protein AT3G54020:AtIPCS1:Inositol phosphorylceramide synthase 1 0
Glyma.U028000 hypothetical protein NA 0
Glyma.U028100 hypothetical protein NA 0