Soybean mGWAS DB

Explore metabolite–gene associations from soybean metabolome GWAS results. This database supports bidirectional navigation between metabolites and genes, with linked detail pages for association evidence and mass-based compound candidates.

How to explore the database →

SNP and gene associations use P < 10⁻¹⁰. Change threshold · Counts cover features with indexed GWAS data; — means unavailable.

Explore by Metabolite

Search metabolites by metabolite ID or candidate names, formulas or compound IDs.

Open full metabolite explorer

Metabolite ID	Candidate annotation	Deionized mass (Da)	Average m/z	Associated genes (overlap)
P38571	Madecassoside	974.5044	975.5100	103
P39613	Carboxymethyl chitosan	543.2297	544.2379	103
P39803	2,3,4,5-tetranor-9S,11R,15S-trihydroxy-13E-prostenoic acid	300.1905	301.1987	103
P40626	CDP-DG(i-18:0/18:2(9Z,11Z))	1005.5541	1006.5567	103
P41044	Hicksoane B	482.1184	483.1260	103
P41403	Levetiracetam	170.1061	171.1136	103
P42139	Alloeremophilone	218.1653	437.3391	103
P43927		649.4107	650.4226	103
P49594	(+)-Mecambroline	295.1231	296.1302	103
P50391	Rubescensin M	682.4118	683.4174	103

Explore by Gene

Search genes by gene ID, alias, description, or Arabidopsis ortholog information.

Open full gene explorer

Gene ID	Description	Arabidopsis ortholog
Glyma.U024200
Glyma.U024300
Glyma.U024400
Glyma.U024500
Glyma.U024600	hypothetical protein	NA
Glyma.U024700	hypothetical protein	AT5G40670:AT5G40670:PQ-loop repeat family protein / transmembrane family protein
Glyma.U024800	hypothetical protein	NA
Glyma.U024900	hypothetical protein	AT5G53900:AT5G53900:Serine/threonine-protein kinase WNK (With No Lysine)-like protein
Glyma.U025000	hypothetical protein	NA
Glyma.U025100	hypothetical protein	AT2G38110:GPAT6:glycerol-3-phosphate acyltransferase 6