Soybean mGWAS DB

Explore metabolite–gene associations from soybean metabolome GWAS results. This database supports bidirectional navigation between metabolites and genes, with linked detail pages for association evidence and mass-based compound candidates.

How to explore the database →

SNP and gene associations use P < 10⁻¹⁰. Change threshold · Counts cover features with indexed GWAS data; — means unavailable.

Explore by Metabolite

Search metabolites by metabolite ID or candidate names, formulas or compound IDs.

Metabolite ID Candidate annotation Deionized mass (Da) Average m/z Associated genes (overlap)
P47365 460.7583 461.7632 119
P47387 (2S)-3-(1H-Indol-3-yl)-N-[[1-(4-methoxyphenyl)cyclohexyl]methyl]-2-[(4-nitrophenyl)carbamoylamino]propanamide 569.2634 570.2722 119
P50923 2-(8-[3]-ladderane-octanyl)-sn-glycero-3-phosphocholine 529.3579 530.3650 119
P52902 Tyrosyl-Gamma-glutamate 309.1304 310.1358 119
P01956 6,2'4'-Trihydroxy-2-phenylbenzofuran 242.0592 243.0658 118
P04366 1-Guanidino-1-deoxy-scyllo-inositol 4-phosphate 301.0725 302.0797 118
P04884 Anhalidine 223.1170 224.1254 118
P06520 2S-(6,12-dichloro-dodecanoyloxy)-propanoic acid 340.1230 341.1301 118
P06623 5-Formylbenzofuran 146.0367 147.0447 118
P09032 10,20-Dehydro[12,13-dehydroprolyl]-2-(1',1'-dimethylallyltryptophyl)diketopiperazine 347.1648 348.1720 118

Explore by Gene

Search genes by gene ID, alias, description, or Arabidopsis ortholog information.

Gene ID Alias Description Arabidopsis ortholog Associated metabolites (overlap)
Glyma.U024200 0
Glyma.U024300 0
Glyma.U024400 0
Glyma.U024500 0
Glyma.U024600 hypothetical protein NA 0
Glyma.U024700 hypothetical protein AT5G40670:AT5G40670:PQ-loop repeat family protein / transmembrane family protein 0
Glyma.U024800 hypothetical protein NA 0
Glyma.U024900 hypothetical protein AT5G53900:AT5G53900:Serine/threonine-protein kinase WNK (With No Lysine)-like protein 0
Glyma.U025000 hypothetical protein NA 0
Glyma.U025100 hypothetical protein AT2G38110:GPAT6:glycerol-3-phosphate acyltransferase 6 0