Soybean mGWAS DB

Explore metabolite–gene associations from soybean metabolome GWAS results. This database supports bidirectional navigation between metabolites and genes, with linked detail pages for association evidence and mass-based compound candidates.

How to explore the database →

SNP and gene associations use P < 10⁻¹⁰. Change threshold · Counts cover features with indexed GWAS data; — means unavailable.

Explore by Metabolite

Search metabolites by metabolite ID or candidate names, formulas or compound IDs.

Open full metabolite explorer

Metabolite ID	Candidate annotation	Deionized mass (Da)	Average m/z	Associated genes (overlap)
P31330	Arginine chloride	192.0780	193.0844	125
P42656		605.7500	606.7519	125
P44609	1-Acetoxy-3,15-epoxygymnomitrane	278.1877	279.1947	125
P47637		90.0461	91.0533	125
P47673		90.0465	91.0540	125
P48236	N-Palmitoyl Glutamic acid	385.2787	386.2871	125
P49106	Prodiamine	350.1210	351.1290	125
P50486	5-oxo-7-(S-glutathionyl)-8Z,11Z,14Z-eicosatrienoic acid	597.2751	598.2818	125
P53413	Tetradecyl nicotinate	319.2477	320.2545	125
P00779	2-Methylthio-N6-(delta2-isopentenyl)adenosine	381.1432	382.1491	124

Explore by Gene

Search genes by gene ID, alias, description, or Arabidopsis ortholog information.

Open full gene explorer

Gene ID	Description	Arabidopsis ortholog
Glyma.U024200
Glyma.U024300
Glyma.U024400
Glyma.U024500
Glyma.U024600	hypothetical protein	NA
Glyma.U024700	hypothetical protein	AT5G40670:AT5G40670:PQ-loop repeat family protein / transmembrane family protein
Glyma.U024800	hypothetical protein	NA
Glyma.U024900	hypothetical protein	AT5G53900:AT5G53900:Serine/threonine-protein kinase WNK (With No Lysine)-like protein
Glyma.U025000	hypothetical protein	NA
Glyma.U025100	hypothetical protein	AT2G38110:GPAT6:glycerol-3-phosphate acyltransferase 6