Soybean mGWAS DB

Explore metabolite–gene associations from soybean metabolome GWAS results. This database supports bidirectional navigation between metabolites and genes, with linked detail pages for association evidence and mass-based compound candidates.

How to explore the database →

SNP and gene associations use P < 10⁻¹⁰. Change threshold · Counts cover features with indexed GWAS data; — means unavailable.

Explore by Metabolite

Search metabolites by metabolite ID or candidate names, formulas or compound IDs.

Metabolite ID Candidate annotation Deionized mass (Da) Average m/z Associated genes (overlap)
P06381 6',7'-Dihydroxybergamottin 372.1547 373.1621 162
P06792 Myo-inositol glutamate 323.0859 324.0925 162
P10166 Demeton-O 258.0513 259.0583 162
P11723 Isomagnolol 266.1356 267.1438 162
P14158 Physalien 650.1559 651.1582 162
P21337 3-(9-Adeninyl)propionic acid. 207.0794 208.0868 162
P32513 Cefbuperazone 627.1640 628.1696 162
P41353 Deoxyharringtonine 515.2462 516.2526 162
P41829 Renieramycin R 605.2383 606.2458 162
P49182 Noberastine 311.1785 312.1827 162

Explore by Gene

Search genes by gene ID, alias, description, or Arabidopsis ortholog information.

Gene ID Alias Description Arabidopsis ortholog Associated metabolites (overlap)
Glyma.20G239600 hypothetical protein NA 0
Glyma.20G239700 hypothetical protein AT2G39470:PnsL1:PsbP-like protein 2 0
Glyma.20G239800 hypothetical protein AT2G39480:ABCB6:P-glycoprotein 6 0
Glyma.20G239900 hypothetical protein NA 0
Glyma.20G240000 hypothetical protein AT3G55260:HEXO1:beta-hexosaminidase 1 0
Glyma.20G240100 hypothetical protein AT3G55240:AT3G55240:Plant protein 1589 of unknown function__AT3G28990:AT3G28990:Plant protein 1589 of unknown function 0
Glyma.20G240200 hypothetical protein NA 0
Glyma.20G240300 DHAR4 DHAR class glutathione S-transferase AT1G19550:AT1G19550:Glutathione S-transferase family protein__AT1G75270:DHAR2:dehydroascorbate reductase 2 0
Glyma.20G240400 hypothetical protein AT1G80480:PTAC17:plastid transcriptionally active 17 0
Glyma.20G240500 hypothetical protein AT3G55220:SAP130b:Cleavage and polyadenylation specificity factor (CPSF) A subunit protein 0