Soybean mGWAS DB

Explore metabolite–gene associations from soybean metabolome GWAS results. This database supports bidirectional navigation between metabolites and genes, with linked detail pages for association evidence and mass-based compound candidates.

How to explore the database →

SNP and gene associations use P < 10⁻¹⁰. Change threshold · Counts cover features with indexed GWAS data; — means unavailable.

Explore by Metabolite

Search metabolites by metabolite ID or candidate names, formulas or compound IDs.

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Metabolite ID	Candidate annotation	Deionized mass (Da)	Average m/z	Associated genes (overlap)
P17402	Stenopalustroside E	966.2688	967.2721	340
P22371		352.6573	353.6630	314
P13413	(4-Ethylnaphthalen-1-yl)[1-(5-fluoropentyl)-1H-indol-3-yl]methanone	387.2022	388.2077	311
P13744	Mutangin	636.2571	637.2635	310
P40835	Gnidicin-20-palmitate	866.4613	867.4696	309
P42556	Arboreaside B	1104.5548	1105.5612	304
P16221	Ganomastenol C	254.1849	255.1926	299
P15142		521.2481	522.2554	297
P34561		818.1767	819.1780	295
P00008		281.8737	282.8810	292

Explore by Gene

Search genes by gene ID, alias, description, or Arabidopsis ortholog information.

Open full gene explorer

Gene ID	Description	Arabidopsis ortholog
Glyma.20G222700	hypothetical protein	AT5G28900:AT5G28900:Calcium-binding EF-hand family protein
Glyma.20G222900	hypothetical protein	AT1G08610:AT1G08610:Pentatricopeptide repeat (PPR) superfamily protein
Glyma.20G223000	hypothetical protein	AT3G04500:AT3G04500:RNA-binding (RRM/RBD/RNP motifs) family protein
Glyma.20G223100	hypothetical protein	AT3G04510:LSH2:LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640)
Glyma.20G223200	hypothetical protein	AT3G04520:THA2:threonine aldolase 2
Glyma.20G223400	hypothetical protein	NA
Glyma.20G223500	hypothetical protein	AT3G04470:AT3G04470:Ankyrin repeat family protein
Glyma.20G223700	hypothetical protein	AT5G28150:AT5G28150:
Glyma.20G223800	hypothetical protein	NA
Glyma.20G223900	hypothetical protein	NA