Soybean mGWAS DB

Explore metabolite–gene associations from soybean metabolome GWAS results. This database supports bidirectional navigation between metabolites and genes, with linked detail pages for association evidence and mass-based compound candidates.

How to explore the database →

SNP and gene associations use P < 10⁻¹⁰. Change threshold · Counts cover features with indexed GWAS data; — means unavailable.

Explore by Metabolite

Search metabolites by metabolite ID or candidate names, formulas or compound IDs.

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Metabolite ID	Candidate annotation	Deionized mass (Da)	Average m/z	Associated genes (overlap)
P45656	Aglain B	630.2840	631.2925	117
P45744		366.6513	367.6565	117
P53375	N(6)-Monobutyryladenosine	337.1396	338.1472	117
P53643		662.1493	663.1566	117
P54509	n2-Acetyl,n6-methyllysine	202.1324	203.1390	117
P04587	Methionyl-Glutamate	278.0937	279.1010	116
P13464	Tripterygiumine T	693.2310	694.2329	116
P17580	Swietenidin B	205.0721	206.0796	116
P22655	Candoxatrilat	399.2293	400.2366	116
P25819	Thonzylamine	286.1743	287.1822	116

Explore by Gene

Search genes by gene ID, alias, description, or Arabidopsis ortholog information.

Open full gene explorer

Gene ID	Description	Arabidopsis ortholog
Glyma.20G222700	hypothetical protein	AT5G28900:AT5G28900:Calcium-binding EF-hand family protein
Glyma.20G222900	hypothetical protein	AT1G08610:AT1G08610:Pentatricopeptide repeat (PPR) superfamily protein
Glyma.20G223000	hypothetical protein	AT3G04500:AT3G04500:RNA-binding (RRM/RBD/RNP motifs) family protein
Glyma.20G223100	hypothetical protein	AT3G04510:LSH2:LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640)
Glyma.20G223200	hypothetical protein	AT3G04520:THA2:threonine aldolase 2
Glyma.20G223400	hypothetical protein	NA
Glyma.20G223500	hypothetical protein	AT3G04470:AT3G04470:Ankyrin repeat family protein
Glyma.20G223700	hypothetical protein	AT5G28150:AT5G28150:
Glyma.20G223800	hypothetical protein	NA
Glyma.20G223900	hypothetical protein	NA