Soybean mGWAS DB

Explore metabolite–gene associations from soybean metabolome GWAS results. This database supports bidirectional navigation between metabolites and genes, with linked detail pages for association evidence and mass-based compound candidates.

How to explore the database →

SNP and gene associations use P < 10⁻¹⁰. Change threshold · Counts cover features with indexed GWAS data; — means unavailable.

Explore by Metabolite

Search metabolites by metabolite ID or candidate names, formulas or compound IDs.

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Metabolite ID	Candidate annotation	Deionized mass (Da)	Average m/z	Associated genes (overlap)
P44143	Spenolimycin	346.1732	347.1809	129
P46495	Maximaisoflavone B	350.1150	351.1216	129
P47071	Chondramide A	646.3320	647.3399	129
P47983		697.4235	698.4278	129
P49645	Halistanol sulfate	688.2600	689.2620	129
P51555	5,7a-Dihydro-1,4,4,7a-tetramethyl-4H-indene	174.1404	175.1465	129
P54771	Inhibitor 50	435.0802	436.0893	129
P00240	Captopril-cysteine disulfide	336.0804	337.0872	128
P06891	2,5-Dimethylfuran	96.0572	97.0644	128
P07278		435.1175	436.1265	128

Explore by Gene

Search genes by gene ID, alias, description, or Arabidopsis ortholog information.

Open full gene explorer

Gene ID	Description	Arabidopsis ortholog
Glyma.20G222700	hypothetical protein	AT5G28900:AT5G28900:Calcium-binding EF-hand family protein
Glyma.20G222900	hypothetical protein	AT1G08610:AT1G08610:Pentatricopeptide repeat (PPR) superfamily protein
Glyma.20G223000	hypothetical protein	AT3G04500:AT3G04500:RNA-binding (RRM/RBD/RNP motifs) family protein
Glyma.20G223100	hypothetical protein	AT3G04510:LSH2:LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640)
Glyma.20G223200	hypothetical protein	AT3G04520:THA2:threonine aldolase 2
Glyma.20G223400	hypothetical protein	NA
Glyma.20G223500	hypothetical protein	AT3G04470:AT3G04470:Ankyrin repeat family protein
Glyma.20G223700	hypothetical protein	AT5G28150:AT5G28150:
Glyma.20G223800	hypothetical protein	NA
Glyma.20G223900	hypothetical protein	NA