Soybean mGWAS DB

Explore metabolite–gene associations from soybean metabolome GWAS results. This database supports bidirectional navigation between metabolites and genes, with linked detail pages for association evidence and mass-based compound candidates.

How to explore the database →

SNP and gene associations use P < 10⁻¹⁰. Change threshold · Counts cover features with indexed GWAS data; — means unavailable.

Explore by Metabolite

Search metabolites by metabolite ID or candidate names, formulas or compound IDs.

Metabolite ID Candidate annotation Deionized mass (Da) Average m/z Associated genes (overlap)
P31330 Arginine chloride 192.0780 193.0844 125
P42656 605.7500 606.7519 125
P44609 1-Acetoxy-3,15-epoxygymnomitrane 278.1877 279.1947 125
P47637 90.0461 91.0533 125
P47673 90.0465 91.0540 125
P48236 N-Palmitoyl Glutamic acid 385.2787 386.2871 125
P49106 Prodiamine 350.1210 351.1290 125
P50486 5-oxo-7-(S-glutathionyl)-8Z,11Z,14Z-eicosatrienoic acid 597.2751 598.2818 125
P53413 Tetradecyl nicotinate 319.2477 320.2545 125
P00779 2-Methylthio-N6-(delta2-isopentenyl)adenosine 381.1432 382.1491 124

Explore by Gene

Search genes by gene ID, alias, description, or Arabidopsis ortholog information.

Gene ID Alias Description Arabidopsis ortholog Associated metabolites (overlap)
Glyma.20G221500 hypothetical protein AT5G37360:AT5G37360:LOW protein: ammonium transporter 1-like protein 0
Glyma.20G221600 hypothetical protein AT5G38890:AT5G38890:Nucleic acid-binding, OB-fold-like protein 0
Glyma.20G221700 hypothetical protein AT3G04300:AT3G04300:RmlC-like cupins superfamily protein 0
Glyma.20G221800 hypothetical protein AT3G04580:EIN4:Signal transduction histidine kinase, hybrid-type, ethylene sensor 0
Glyma.20G221900 hypothetical protein NA 0
Glyma.20G222000 hypothetical protein AT3G04570:AHL19:AT-hook motif nuclear-localized protein 19 0
Glyma.20G222100 hypothetical protein AT3G04560:AT3G04560:nucleolar/coiled-body phosphoprotein 0
Glyma.20G222200 hypothetical protein AT3G04550:AT3G04550:rubisco accumulation factor-like protein 0
Glyma.20G222400 hypothetical protein NA 0
Glyma.20G222600 PPCK2 phosphoenolpyruvate carboxylase kinase AT1G08650:PPCK1:phosphoenolpyruvate carboxylase kinase 1 0