Soybean mGWAS DB

Explore metabolite–gene associations from soybean metabolome GWAS results. This database supports bidirectional navigation between metabolites and genes, with linked detail pages for association evidence and mass-based compound candidates.

How to explore the database →

SNP and gene associations use P < 10⁻¹⁰. Change threshold · Counts cover features with indexed GWAS data; — means unavailable.

Explore by Metabolite

Search metabolites by metabolite ID or candidate names, formulas or compound IDs.

Metabolite ID Candidate annotation Deionized mass (Da) Average m/z Associated genes (overlap)
P54994 487.3446 488.3495 —
P55002 Ripromycin 524.2860 525.2964 —
P55003 Gaudichaudiic acid C 592.2313 593.2400 —
P55005 16S-methyl-sphing-4-enine 313.2955 314.3020 —
P55006 Leucyl-3-epi-deoxynegamycin 345.2398 346.2468 —
P55011 Dehydroabietal 284.2130 285.2200 —
P55012 9R-hydroxy-2E,4E-decadienoic acid 184.1098 185.1166 —
P55015 Chokol F 240.1764 241.1830 —
P55018 286.2237 287.2321 —
P55020 Rosmarinine-2-acetate 395.1928 396.1994 —

Explore by Gene

Search genes by gene ID, alias, description, or Arabidopsis ortholog information.

Gene ID Alias Description Arabidopsis ortholog Associated metabolites (overlap)
Glyma.20G215300 hypothetical protein AT4G31330:AT4G31330:transmembrane protein, putative (Protein of unknown function, DUF599) 0
Glyma.20G215400 hypothetical protein NA 0
Glyma.20G215500 hypothetical protein NA 0
Glyma.20G215700 hypothetical protein NA 0
Glyma.20G215800 hypothetical protein AT4G00026:SD3:import inner membrane translocase subunit 0
Glyma.20G215900 hypothetical protein AT1G73210:AT1G73210: 0
Glyma.20G216000 hypothetical protein AT5G08370:AGAL2:alpha-galactosidase 2 0
Glyma.20G216100 hypothetical protein AT1G17810:BETA-TIP:beta-tonoplast intrinsic protein 0
Glyma.20G216200 hypothetical protein NA 0
Glyma.20G216300 hypothetical protein AT1G54540:AT1G54540:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein family 0