Soybean mGWAS DB

Explore metabolite–gene associations from soybean metabolome GWAS results. This database supports bidirectional navigation between metabolites and genes, with linked detail pages for association evidence and mass-based compound candidates.

How to explore the database →

SNP and gene associations use P < 10⁻¹⁰. Change threshold · Counts cover features with indexed GWAS data; — means unavailable.

Explore by Metabolite

Search metabolites by metabolite ID or candidate names, formulas or compound IDs.

Open full metabolite explorer

Metabolite ID	Candidate annotation	Deionized mass (Da)	Average m/z	Associated genes (overlap)
P18539	5-Methoxy-8,8-dimethyl-10-(3',7'-dimethylocta-1',6'-dien-3'-yl)-2H,8H,benzo[1,2-b:5,4-b']dipyran-2-one	394.2146	395.2222	136
P27982	Lamiuside D	816.2749	817.2832	136
P29257	9R-hydroxy-2S,8S-dimethyl-3-oxo-2E,4E-undecadienoic acid	240.1363	241.1427	136
P32748	R-30-hydroxygambogic acid	644.3018	645.3070	136
P33955	Bernardioside B2	958.5145	959.5170	136
P34540		631.7998	632.8043	136
P40186	Nigakilactone E	450.2230	451.2299	136
P42246		1097.0166	1098.0239	136
P46622		816.3538	817.3660	136
P07903	Coptisine	319.0848	320.0900	135

Explore by Gene

Search genes by gene ID, alias, description, or Arabidopsis ortholog information.

Open full gene explorer

Gene ID	Alias	Description	Arabidopsis ortholog
Glyma.20G209400		hypothetical protein	AT3G23280:XBAT35:uncharacterized protein__AT4G14365:XBAT34:uncharacterized protein
Glyma.20G209500		hypothetical protein	AT4G14380:AT4G14380:cotton fiber protein
Glyma.20G209600		hypothetical protein	NA
Glyma.20G209700	MYB29B2	MYB/HD-like transcription factor	NA
Glyma.20G209800		hypothetical protein	AT2G31200:ADF6:actin depolymerizing factor 6
Glyma.20G209900		hypothetical protein	AT1G04400:CRY2:cryptochrome 2
Glyma.20G210000		hypothetical protein	NA
Glyma.20G210100		hypothetical protein	NA
Glyma.20G210200		hypothetical protein	NA
Glyma.20G210400		hypothetical protein	AT4G14550:IAA14:indole-3-acetic acid inducible 14