Soybean mGWAS DB

Explore metabolite–gene associations from soybean metabolome GWAS results. This database supports bidirectional navigation between metabolites and genes, with linked detail pages for association evidence and mass-based compound candidates.

How to explore the database →

SNP and gene associations use P < 10⁻¹⁰. Change threshold · Counts cover features with indexed GWAS data; — means unavailable.

Explore by Metabolite

Search metabolites by metabolite ID or candidate names, formulas or compound IDs.

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Metabolite ID	Candidate annotation	Deionized mass (Da)	Average m/z	Associated genes (overlap)
P33461	Lucitanib	443.1838	444.1886	154
P35128	N-Acetylsulfamethazine	320.0994	321.1047	154
P41375		207.1309	208.1388	154
P46482	N-Methoxy-1-vinyl-beta-carboline	224.0945	225.1011	154
P47118	3b,15b,17a-Trihydroxy-pregnenone	348.2285	349.2346	154
P00268	trans-4-Carboxymethylenebut-2-en-4-olide	140.0099	141.0172	153
P00726	Ovalitenin C	322.0797	323.0886	153
P04147	Rubomycin F	599.2034	600.2092	153
P12648	Losmapimod	383.2008	384.2088	153
P23946	Peyophorine	249.1325	250.1414	153

Explore by Gene

Search genes by gene ID, alias, description, or Arabidopsis ortholog information.

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Gene ID	Description	Arabidopsis ortholog
Glyma.20G197600	hypothetical protein	NA
Glyma.20G197700	hypothetical protein	AT1G04650:AT1G04650:holliday junction resolvase
Glyma.20G197800	hypothetical protein	NA
Glyma.20G197900	hypothetical protein	AT4G13690:AT4G13690:RNA-binding protein
Glyma.20G198000	hypothetical protein	AT3G24180:AT3G24180:Beta-glucosidase, GBA2 type family protein
Glyma.20G198100	hypothetical protein	AT4G13670:PTAC5:plastid transcriptionally active 5
Glyma.20G198300	Structural maintenance of chromosomes protein 5	AT5G15920:SMC5:structural maintenance of chromosomes 5
Glyma.20G198500	hypothetical protein	AT2G38880:NF-YB1:nuclear factor Y, subunit B1
Glyma.20G198700	hypothetical protein	NA
Glyma.20G198800	hypothetical protein	NA