Soybean mGWAS DB

Explore metabolite–gene associations from soybean metabolome GWAS results. This database supports bidirectional navigation between metabolites and genes, with linked detail pages for association evidence and mass-based compound candidates.

How to explore the database →

SNP and gene associations use P < 10⁻¹⁰. Change threshold · Counts cover features with indexed GWAS data; — means unavailable.

Explore by Metabolite

Search metabolites by metabolite ID or candidate names, formulas or compound IDs.

Open full metabolite explorer

Metabolite ID	Candidate annotation	Deionized mass (Da)	Average m/z	Associated genes (overlap)
P02752	Polanrazine B	377.1240	378.1297	180
P06961	Norhygrine	127.0981	128.1057	180
P10476		264.6079	265.6141	180
P10479	L-Arogenate	227.0795	228.0865	180
P12237	Siwanine A	505.2575	506.2645	180
P16337	Triphyllin A	656.2395	657.2469	180
P17370	Kosinostatin	616.2046	617.2161	180
P26964		688.2990	689.3077	180
P29279	Cyromazine	166.0980	167.1049	180
P30762	5,5-Dimethyl-1-ethyl-1,3-cyclopentadiene	122.1083	123.1160	180

Explore by Gene

Search genes by gene ID, alias, description, or Arabidopsis ortholog information.

Open full gene explorer

Gene ID	Description	Arabidopsis ortholog	Associated metabolites (overlap)
Glyma.18G238000	hypothetical protein	AT1G01490:AT1G01490:Heavy metal transport/detoxification superfamily protein	242
Glyma.01G174600	hypothetical protein	AT5G66740:AT5G66740:spindle assembly abnormal protein (DUF620)	240
Glyma.13G203600	hypothetical protein	AT5G13490:AAC2:ADP/ATP carrier 2	240
Glyma.20G105100	hypothetical protein	NA	239
Glyma.01G174300	hypothetical protein	NA	238
Glyma.05G224200	hypothetical protein	NA	238
Glyma.06G209300	hypothetical protein	NA	238
Glyma.10G080600	hypothetical protein	NA	238
Glyma.10G080700	hypothetical protein	NA	238
Glyma.10G080900	hypothetical protein	NA	238