Soybean mGWAS DB

Explore metabolite–gene associations from soybean metabolome GWAS results. This database supports bidirectional navigation between metabolites and genes, with linked detail pages for association evidence and mass-based compound candidates.

How to explore the database →

SNP and gene associations use P < 10⁻¹⁰. Change threshold · Counts cover features with indexed GWAS data; — means unavailable.

Explore by Metabolite

Search metabolites by metabolite ID or candidate names, formulas or compound IDs.

Metabolite ID Candidate annotation Deionized mass (Da) Average m/z Associated genes (overlap)
P17052 2-Methyl-1-hydroxypropyl-ThPP 496.0998 497.1050 156
P28722 3-tridecylphenol 276.2419 277.2495 156
P34725 Cyanidin 3-(6'',6'''-disinapylsophoroside)-5-glucoside 1184.3199 593.1654 156
P35908 N-(15-methyl-hexadecanoyl) glycine 327.2801 328.2882 156
P41319 Veralosine 617.3970 618.4034 156
P41580 130.9653 131.9723 156
P47930 PS(24:0/16:0) 847.6377 848.6450 156
P55336 283.2761 284.2819 156
P03955 Methylfurfuryl alcohol 112.0518 113.0589 155
P09728 282.1536 283.1610 155

Explore by Gene

Search genes by gene ID, alias, description, or Arabidopsis ortholog information.

Gene ID Alias Description Arabidopsis ortholog Associated metabolites (overlap)
Glyma.20G160000 hypothetical protein NA 0
Glyma.20G160100 hypothetical protein AT4G33410:SPPL1:SIGNAL PEPTIDE PEPTIDASE-LIKE 1 0
Glyma.20G160200 hypothetical protein AT4G24020:NLP7:NIN like protein 7 0
Glyma.20G160300 hypothetical protein AT5G23890:AT5G23890:GPI-anchored adhesin-like protein 0
Glyma.20G160400 hypothetical protein AT2G37600:AT2G37600:Ribosomal protein L36e family protein__AT3G53740:AT3G53740:Ribosomal protein L36e family protein 0
Glyma.20G160500 hypothetical protein AT3G53740:AT3G53740:Ribosomal protein L36e family protein 0
Glyma.20G160600 Histone-lysine N-methyltransferase SUVR3 AT3G03750:SDG20:SET domain protein 20 0
Glyma.20G160700 hypothetical protein NA 0
Glyma.20G160800 hypothetical protein AT3G49055:AT3G49055:ATP-binding protein 0
Glyma.20G160900 hypothetical protein AT3G49060:AT3G49060:U-box domain-containing protein kinase family protein 0