Soybean mGWAS DB

Explore metabolite–gene associations from soybean metabolome GWAS results. This database supports bidirectional navigation between metabolites and genes, with linked detail pages for association evidence and mass-based compound candidates.

How to explore the database →

SNP and gene associations use P < 10⁻¹⁰. Change threshold · Counts cover features with indexed GWAS data; — means unavailable.

Explore by Metabolite

Search metabolites by metabolite ID or candidate names, formulas or compound IDs.

Metabolite ID Candidate annotation Deionized mass (Da) Average m/z Associated genes (overlap)
P18070 Cymbidine A 949.4154 950.4239 236
P25621 Pseudoanisatin 298.1384 299.1467 236
P47300 534.7868 535.7927 236
P31222 Sufotidine 421.2096 422.2177 235
P03976 Dilmapimod 456.1404 457.1517 234
P53033 7-Oxononane-1,1,9-tricarbaldehyde 226.1222 227.1285 234
P05631 Trimethyl orthoacetate 120.0775 121.0848 233
P13790 317.1926 318.1997 233
P23295 3beta-(4-Iodophenyl)tropan-2beta-carboxylic acid isopropyl ester 413.0800 414.0838 233
P11101 L-beta-aspartyl-L-phenylalanine 280.1044 281.1122 231

Explore by Gene

Search genes by gene ID, alias, description, or Arabidopsis ortholog information.

Gene ID Alias Description Arabidopsis ortholog Associated metabolites (overlap)
Glyma.20G154700 hypothetical protein AT5G51920:AT5G51920:Pyridoxal phosphate (PLP)-dependent transferases superfamily protein 0
Glyma.20G154800 hypothetical protein AT3G56060:AT3G56060:Glucose-methanol-choline (GMC) oxidoreductase family protein__AT5G51930:AT5G51930:Glucose-methanol-choline (GMC) oxidoreductase family protein 0
Glyma.20G154900 hypothetical protein NA 0
Glyma.20G155000 hypothetical protein NA 0
Glyma.20G155100 hypothetical protein AT5G51990:CBF4:C-repeat-binding factor 4 0
Glyma.20G155200 hypothetical protein NA 0
Glyma.20G155400 hypothetical protein AT5G52040:RS41:RNA-binding (RRM/RBD/RNP motifs) family protein__AT4G25500:RS40:arginine/serine-rich splicing factor 35 0
Glyma.20G155500 hypothetical protein NA 0
Glyma.20G155700 hypothetical protein AT5G52120:PP2-A14:phloem protein 2-A14 0
Glyma.20G155900 hypothetical protein AT5G51940:NRPB6A:RNA polymerase Rpb6__AT2G04630:NRPB6B:RNA polymerase Rpb6 0