Soybean mGWAS DB

Explore metabolite–gene associations from soybean metabolome GWAS results. This database supports bidirectional navigation between metabolites and genes, with linked detail pages for association evidence and mass-based compound candidates.

How to explore the database →

SNP and gene associations use P < 10⁻¹⁰. Change threshold · Counts cover features with indexed GWAS data; — means unavailable.

Explore by Metabolite

Search metabolites by metabolite ID or candidate names, formulas or compound IDs.

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Metabolite ID	Candidate annotation	Deionized mass (Da)	Average m/z	Associated genes (overlap)
P04657	Isopongaflavone	334.1227	335.1294	188
P06843	Leptanthin	286.0773	287.0845	188
P11295	3,5-Dihydroxyphenyl 1-O-(6-O-galloyl-beta-D-glucopyranoside)	440.0962	441.1006	188
P21336	Quercetin 3-(6''-ethylglucuronide)	506.1066	507.1119	188
P29799	Chaetoxanthone C	390.0909	391.0987	188
P31693		589.2530	590.2594	188
P33310	Ternatin C5	874.1936	875.2042	188
P46593	Chrotacumine B	387.1647	388.1710	188
P47225	Planktocyclin	800.4334	801.4318	188
P04106	N-Trifluoroacetyladriamycinol	641.1784	642.1889	187

Explore by Gene

Search genes by gene ID, alias, description, or Arabidopsis ortholog information.

Open full gene explorer

Gene ID	Alias	Description	Arabidopsis ortholog
Glyma.20G148300	CG-2		NA
Glyma.20G148400	CG-3	beta-conglycinin alpha-subunit	NA
Glyma.20G148500		hypothetical protein	NA
Glyma.20G148600		hypothetical protein	AT2G32010:CVL1:CVP2 like 1
Glyma.20G148700		hypothetical protein	NA
Glyma.20G148800		hypothetical protein	AT1G29900:CARB:carbamoyl phosphate synthetase B
Glyma.20G148900		hypothetical protein	AT3G22740:HMT3:homocysteine S-methyltransferase 3
Glyma.20G149100		hypothetical protein	AT4G14770:TCX2:TESMIN/TSO1-like CXC 2
Glyma.20G149300		hypothetical protein	AT2G32030:AT2G32030:Acyl-CoA N-acyltransferases (NAT) superfamily protein
Glyma.20G149400		hypothetical protein	NA