Soybean mGWAS DB

Explore metabolite–gene associations from soybean metabolome GWAS results. This database supports bidirectional navigation between metabolites and genes, with linked detail pages for association evidence and mass-based compound candidates.

How to explore the database →

SNP and gene associations use P < 10⁻¹⁰. Change threshold · Counts cover features with indexed GWAS data; — means unavailable.

Explore by Metabolite

Search metabolites by metabolite ID or candidate names, formulas or compound IDs.

Open full metabolite explorer

Metabolite ID	Candidate annotation	Deionized mass (Da)	Average m/z	Associated genes (overlap)
P42119		921.9813	922.9917	173
P44185	(9E)-Dodecenoylcarnitine	341.2519	342.2599	173
P52922	Malachite green	328.1969	329.2060	173
P55415		421.3709	422.3785	173
P10915		757.1991	758.2064	172
P17621	o-Benzoquinone	108.0194	109.0278	172
P18759		760.1825	761.1938	172
P21076	2,5-Dioxopyrrolidin-1-yl 4-(bis(4-chlorophenyl)methyl)piperazine-1-carboxylate	461.0890	462.0939	172
P31391		297.0583	298.0641	172
P36809	(3S)-3-Hydroxy-N6,N6,N6-trimethyl-L-lysine	204.1488	205.1568	172

Explore by Gene

Search genes by gene ID, alias, description, or Arabidopsis ortholog information.

Open full gene explorer

Gene ID	Alias	Description	Arabidopsis ortholog
Glyma.20G147300		hypothetical protein	NA
Glyma.20G147400		hypothetical protein	AT4G14830:HSP1:__AT3G22530:AT3G22530:heat shock protein
Glyma.20G147500		hypothetical protein	NA
Glyma.20G147600	PM25	seed maturation protein PM25	AT3G22490:AT3G22490:Seed maturation protein__AT3G22500:ATECP31:Seed maturation protein
Glyma.20G147700		hypothetical protein	AT1G05420:OFP12:ovate family protein 12
Glyma.20G147800		hypothetical protein	NA
Glyma.20G147900		hypothetical protein	NA
Glyma.20G148000		hypothetical protein	NA
Glyma.20G148100		hypothetical protein	AT4G14880:OASA1:O-acetylserine (thiol) lyase (OAS-TL) isoform A1
Glyma.20G148200	CG-BETA-2	beta-conglycinin, beta chain-like	NA