Soybean mGWAS DB

Explore metabolite–gene associations from soybean metabolome GWAS results. This database supports bidirectional navigation between metabolites and genes, with linked detail pages for association evidence and mass-based compound candidates.

How to explore the database →

SNP and gene associations use P < 10⁻¹⁰. Change threshold · Counts cover features with indexed GWAS data; — means unavailable.

Explore by Metabolite

Search metabolites by metabolite ID or candidate names, formulas or compound IDs.

Open full metabolite explorer

Metabolite ID	Candidate annotation	Deionized mass (Da)	Average m/z	Associated genes (overlap)
P18539	5-Methoxy-8,8-dimethyl-10-(3',7'-dimethylocta-1',6'-dien-3'-yl)-2H,8H,benzo[1,2-b:5,4-b']dipyran-2-one	394.2146	395.2222	136
P27982	Lamiuside D	816.2749	817.2832	136
P29257	9R-hydroxy-2S,8S-dimethyl-3-oxo-2E,4E-undecadienoic acid	240.1363	241.1427	136
P32748	R-30-hydroxygambogic acid	644.3018	645.3070	136
P33955	Bernardioside B2	958.5145	959.5170	136
P34540		631.7998	632.8043	136
P40186	Nigakilactone E	450.2230	451.2299	136
P42246		1097.0166	1098.0239	136
P46622		816.3538	817.3660	136
P07903	Coptisine	319.0848	320.0900	135

Explore by Gene

Search genes by gene ID, alias, description, or Arabidopsis ortholog information.

Open full gene explorer

Gene ID	Description	Arabidopsis ortholog
Glyma.20G135000	hypothetical protein	AT2G01270:QSOX2:quiescin-sulfhydryl oxidase 2
Glyma.20G135100	hypothetical protein	NA
Glyma.20G135200	hypothetical protein	NA
Glyma.20G135300	hypothetical protein	AT1G49960:AT1G49960:Xanthine/uracil permease family protein
Glyma.20G135400	hypothetical protein	NA
Glyma.20G135500	hypothetical protein	NA
Glyma.20G135600	hypothetical protein	AT1G50000:AT1G50000:methyltransferase
Glyma.20G135700	hypothetical protein	NA
Glyma.20G136000	hypothetical protein	AT1G50010:TUA2:tubulin alpha-2 chain
Glyma.20G136100	hypothetical protein	AT1G50020:AT1G50020:tubulin alpha-6 chain