Soybean mGWAS DB

Explore metabolite–gene associations from soybean metabolome GWAS results. This database supports bidirectional navigation between metabolites and genes, with linked detail pages for association evidence and mass-based compound candidates.

How to explore the database →

SNP and gene associations use P < 10⁻¹⁰. Change threshold · Counts cover features with indexed GWAS data; — means unavailable.

Explore by Metabolite

Search metabolites by metabolite ID or candidate names, formulas or compound IDs.

Open full metabolite explorer

Metabolite ID	Candidate annotation	Deionized mass (Da)	Average m/z	Associated genes (overlap)
P23451		607.2766	608.2820	221
P05770	1-Methylpiperidin-4-yl butanoate	185.1403	186.1473	220
P09835	10-Formyldihydrofolate	471.1494	472.1544	220
P10595		317.1915	318.1977	220
P12478	5,7-octadienoic acid	140.0839	141.0905	220
P19868	Cohaerin C	482.2267	483.2355	220
P30782	Cryptostigmin IV	1030.4967	1031.5022	220
P40362	BL V	424.0812	425.0898	220
P44001		839.4221	840.4307	220
P05350	Methylinoscavin B	450.1344	451.1421	219

Explore by Gene

Search genes by gene ID, alias, description, or Arabidopsis ortholog information.

Open full gene explorer

Gene ID	Alias	Description	Arabidopsis ortholog
Glyma.20G115300		hypothetical protein	AT3G25890:CRF11:Integrase-type DNA-binding superfamily protein
Glyma.20G115500		hypothetical protein	AT1G68530:KCS6:3-ketoacyl-CoA synthase 6
Glyma.20G115600		hypothetical protein	AT1G68520:BBX14:B-box type zinc finger protein with CCT domain-containing protein
Glyma.20G115700		hypothetical protein	NA
Glyma.20G115800		hypothetical protein	NA
Glyma.20G115900		hypothetical protein	NA
Glyma.20G116000		hypothetical protein	AT1G68490:AT1G68490:translocase subunit seca
Glyma.20G116200	Ln		AT1G68480:JAG:C2H2 and C2HC zinc fingers superfamily protein
Glyma.20G116400		hypothetical protein	AT1G77420:AT1G77420:alpha/beta-Hydrolases superfamily protein
Glyma.20G116500		hypothetical protein	AT3G19160:IPT8:ATP/ADP isopentenyltransferase