Soybean mGWAS DB

Explore metabolite–gene associations from soybean metabolome GWAS results. This database supports bidirectional navigation between metabolites and genes, with linked detail pages for association evidence and mass-based compound candidates.

How to explore the database →

SNP and gene associations use P < 10⁻¹⁰. Change threshold · Counts cover features with indexed GWAS data; — means unavailable.

Explore by Metabolite

Search metabolites by metabolite ID or candidate names, formulas or compound IDs.

Metabolite ID Candidate annotation Deionized mass (Da) Average m/z Associated genes (overlap)
P55548 347.3085 348.3149 —
P55550 16-Methylheptadecanoylcarnitine 427.3718 428.3783 —
P55555 Pro-Pro-Phe 359.1790 360.1862 —
P55556 273.9162 274.9238 —
P55557 177.9525 178.9596 —
P55558 127.9526 128.9604 —
P55560 Evodone 164.0824 329.1720 —
P55562 Isomytiloxanthin 598.4011 599.4090 —
P55563 108.0105 109.0176 —
P55565 (-)-Tetrodecamycin 334.1416 335.1503 —

Explore by Gene

Search genes by gene ID, alias, description, or Arabidopsis ortholog information.

Gene ID Alias Description Arabidopsis ortholog Associated metabolites (overlap)
Glyma.20G019200 hypothetical protein AT2G15430:NRPB3:DNA-directed RNA polymerase family protein 0
Glyma.20G019400 hypothetical protein AT5G18820:Cpn60alpha2:TCP-1/cpn60 chaperonin family protein 0
Glyma.20G019600 hypothetical protein NA 0
Glyma.20G020000 hypothetical protein AT1G11880:AT1G11880:transferases, transferring hexosyl groups 0
Glyma.20G020100 hypothetical protein AT4G19900:AT4G19900:alpha 1,4-glycosyltransferase family protein 0
Glyma.20G020200 hypothetical protein NA 0
Glyma.20G020300 hypothetical protein AT5G45020:AT5G45020:Glutathione S-transferase family protein__AT4G19880:AT4G19880:Glutathione S-transferase family protein__AT5G44990:AT5G44990:Glutathione S-transferase family protein 0
Glyma.20G020400 hypothetical protein AT2G35155:AT2G35155:Trypsin family protein__AT5G45030:AT5G45030:Trypsin family protein 0
Glyma.20G020500 hypothetical protein NA 0
Glyma.20G020600 hypothetical protein AT5G45040:CYTC6A:Cytochrome c 0