Soybean mGWAS DB

Explore metabolite–gene associations from soybean metabolome GWAS results. This database supports bidirectional navigation between metabolites and genes, with linked detail pages for association evidence and mass-based compound candidates.

How to explore the database →

SNP and gene associations use P < 10⁻¹⁰. Change threshold · Counts cover features with indexed GWAS data; — means unavailable.

Explore by Metabolite

Search metabolites by metabolite ID or candidate names, formulas or compound IDs.

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Metabolite ID	Candidate annotation	Deionized mass (Da)	Average m/z	Associated genes (overlap)
P17402	Stenopalustroside E	966.2688	967.2721	340
P22371		352.6573	353.6630	314
P13413	(4-Ethylnaphthalen-1-yl)[1-(5-fluoropentyl)-1H-indol-3-yl]methanone	387.2022	388.2077	311
P13744	Mutangin	636.2571	637.2635	310
P40835	Gnidicin-20-palmitate	866.4613	867.4696	309
P42556	Arboreaside B	1104.5548	1105.5612	304
P16221	Ganomastenol C	254.1849	255.1926	299
P15142		521.2481	522.2554	297
P34561		818.1767	819.1780	295
P00008		281.8737	282.8810	292

Explore by Gene

Search genes by gene ID, alias, description, or Arabidopsis ortholog information.

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Gene ID	Alias	Description	Arabidopsis ortholog
Glyma.19G260800		hypothetical protein	NA
Glyma.19G260900	LCL3	LHY1/CCA1-like protein	AT1G01060:LHY:Homeodomain-like superfamily protein
Glyma.19G261000		hypothetical protein	AT2G46850:AT2G46850:Protein kinase superfamily protein
Glyma.19G261100		hypothetical protein	AT1G01050:PPa1:pyrophosphorylase 1
Glyma.19G261200		hypothetical protein	NA
Glyma.19G261300		hypothetical protein	NA
Glyma.19G261400		hypothetical protein	NA
Glyma.19G261500		hypothetical protein	AT2G46880:PAP14:purple acid phosphatase 14
Glyma.19G261600		hypothetical protein	AT2G46890:AT2G46890:3-oxo-5-alpha-steroid 4-dehydrogenase (DUF1295)
Glyma.19G261700		hypothetical protein	AT3G14350:SRF7:STRUBBELIG-receptor family 7__AT1G53730:SRF6:STRUBBELIG-receptor family 6