Soybean mGWAS DB

Explore metabolite–gene associations from soybean metabolome GWAS results. This database supports bidirectional navigation between metabolites and genes, with linked detail pages for association evidence and mass-based compound candidates.

How to explore the database →

SNP and gene associations use P < 10⁻¹⁰. Change threshold · Counts cover features with indexed GWAS data; — means unavailable.

Explore by Metabolite

Search metabolites by metabolite ID or candidate names, formulas or compound IDs.

Metabolite ID Candidate annotation Deionized mass (Da) Average m/z Associated genes (overlap)
P03735 Aclidinomycin A 415.1744 416.1842 112
P06337 Furo[3,2-c]pyran-4-one 136.0153 137.0226 112
P09010 283.1491 284.1561 112
P09263 (8R,8'R,9'S)-5-Methoxyclusin 432.1802 433.1856 112
P10690 4,2',3',4'-Tetrahydroxychalcone 4'-O-(2''-O-p-coumaroyl-6''-O-acetyl)glucoside 622.1619 623.1687 112
P12368 p-Hydroxyphenylacetylglycine 209.0666 210.0754 112
P16945 Cyclopenta[cd]pyrene 226.0786 227.0845 112
P17145 alpha-Methylphenylalanine 179.0929 180.1004 112
P17481 N-(4-Acetyl-2-(2,4-difluorophenoxy)phenyl)methanesulfonamide 341.0498 342.0579 112
P19717 Blennione 348.0554 349.0621 112

Explore by Gene

Search genes by gene ID, alias, description, or Arabidopsis ortholog information.

Gene ID Alias Description Arabidopsis ortholog Associated metabolites (overlap)
Glyma.08G139300 hypothetical protein AT2G22125:CSI1:binding protein 298
Glyma.03G119400 hypothetical protein AT5G43280:DCI1:delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 296
Glyma.09G252300 hypothetical protein AT5G16520:AT5G16520:uncharacterized protein 296
Glyma.03G169700 hypothetical protein AT2G20240:TRM17:GPI-anchored adhesin-like protein, putative (DUF3741)__AT4G28760:TRM20:methyl-coenzyme M reductase II subunit gamma, putative (DUF3741) 292
Glyma.17G092800 hypothetical protein NA 291
Glyma.17G217900 hypothetical protein NA 284
Glyma.02G295900 hypothetical protein NA 282
Glyma.02G296200 hypothetical protein AT5G55390:EDM2:ENHANCED DOWNY MILDEW 2 282
Glyma.05G125800 hypothetical protein AT2G34790:MEE23:FAD-binding Berberine family protein 282
Glyma.07G068600 hypothetical protein NA 281