Soybean mGWAS DB

Explore metabolite–gene associations from soybean metabolome GWAS results. This database supports bidirectional navigation between metabolites and genes, with linked detail pages for association evidence and mass-based compound candidates.

How to explore the database →

SNP and gene associations use P < 10⁻¹⁰. Change threshold · Counts cover features with indexed GWAS data; — means unavailable.

Explore by Metabolite

Search metabolites by metabolite ID or candidate names, formulas or compound IDs.

Metabolite ID Candidate annotation Deionized mass (Da) Average m/z Associated genes (overlap)
P11509 Asperlicin D 406.1430 407.1476 100
P11663 Trifuhalol B 390.0557 391.0624 100
P11969 Gravacridonolchlorine 375.0857 376.0932 100
P12097 p-Coumaroyl-malic acid 280.0570 281.0634 100
P12325 Amrubicin 483.1490 484.1548 100
P13447 Antibiotic TAN 585D 514.1701 515.1770 100
P15563 UR-12947 563.2211 564.2282 100
P16079 Funebral 237.0995 238.1055 100
P18868 Formosanatin A 520.2059 521.2147 100
P19512 Antibiotic 2088A 399.1431 400.1518 100

Explore by Gene

Search genes by gene ID, alias, description, or Arabidopsis ortholog information.

Gene ID Alias Description Arabidopsis ortholog Associated metabolites (overlap)
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 2,735
Glyma.06G313500 hypothetical protein NA 2,699
Glyma.10G081700 hypothetical protein NA 2,676
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 2,676
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 2,671
Glyma.12G114900 hypothetical protein NA 2,671
Glyma.12G108600 hypothetical protein NA 2,658
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 2,658
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 2,619
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 2,611