Soybean mGWAS DB

Explore metabolite–gene associations from soybean metabolome GWAS results. This database supports bidirectional navigation between metabolites and genes, with linked detail pages for association evidence and mass-based compound candidates.

How to explore the database →

SNP and gene associations use P < 10⁻¹⁰. Change threshold · Counts cover features with indexed GWAS data; — means unavailable.

Explore by Metabolite

Search metabolites by metabolite ID or candidate names, formulas or compound IDs.

Metabolite ID Candidate annotation Deionized mass (Da) Average m/z Associated genes (overlap)
P13327 alpha-D-GalpNAc-(1->3)-[alpha-L-Fucp-(1->2)]-D-Galp 529.2044 530.2108 155
P13500 15alpha-acetoxy-16beta,17beta-epoxy-6beta,14beta-dihydroxy-1-oxo-2alpha,5alpha-dioxy-witha3,24-dien-26,22-olide 558.2473 559.2531 155
P17449 Malonylshisonin 842.2068 843.2170 155
P23102 N-(3-hydroxy-heptanoyl)-homoserine lactone 229.1303 230.1369 155
P24676 1-O-(2-Amino-2-deoxy-alpha-D-glucopyranosyl)-1D-myo-inositol 341.1319 342.1398 155
P35412 4,5-Dihydro-drospirenone-3-sulfate 434.2180 435.2256 155
P38939 5,7-octadienoic acid 140.0825 281.1728 155
P40935 259.2097 260.2178 155
P40997 (-)-Sonderianol 298.1892 299.1941 155
P43802 Tetracenomycin E 408.0825 409.0894 155

Explore by Gene

Search genes by gene ID, alias, description, or Arabidopsis ortholog information.

Gene ID Alias Description Arabidopsis ortholog Associated metabolites (overlap)
Glyma.16G139100 hypothetical protein NA 451
Glyma.07G068200 hypothetical protein AT4G00310:EDA8:Putative membrane lipoprotein 449
Glyma.16G142300 hypothetical protein AT4G36850:AT4G36850:PQ-loop repeat family protein / transmembrane family protein 448
Glyma.06G081600 hypothetical protein AT5G11490:AT5G11490:adaptin family protein 447
Glyma.07G071800 hypothetical protein AT4G20960:PyrD:Cytidine/deoxycytidylate deaminase family protein 447
Glyma.09G250000 hypothetical protein NA 443
Glyma.16G209000 hypothetical protein NA 440
Glyma.06G303800 hypothetical protein AT1G05220:AT1G05220:Transmembrane protein 97, Putative__AT2G32380:AT2G32380:Transmembrane protein 97, Putative 438
Glyma.11G024800 hypothetical protein NA 437
Glyma.08G239500 hypothetical protein AT4G09180:FBH2:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 436