Soybean mGWAS DB

Explore metabolite–gene associations from soybean metabolome GWAS results. This database supports bidirectional navigation between metabolites and genes, with linked detail pages for association evidence and mass-based compound candidates.

How to explore the database →

SNP and gene associations use P < 10⁻¹⁰. Change threshold · Counts cover features with indexed GWAS data; — means unavailable.

Explore by Metabolite

Search metabolites by metabolite ID or candidate names, formulas or compound IDs.

Metabolite ID Candidate annotation Deionized mass (Da) Average m/z Associated genes (overlap)
P08589 Benzomalvin D 381.1494 382.1579 250
P23519 Lapathoside A 986.2755 987.2789 250
P44926 Eunicellin 522.2769 523.2852 250
P29538 DG(2:0/0:0/20:5(7Z,9Z,11E,13E,17Z)-3OH(5,6,15)) 466.2567 467.2613 249
P35069 1-hexadecanoyl-2-succinyl-sn-glycero-phosphocholine 595.3591 596.3657 249
P11244 Maculalactone K 532.1815 533.1890 248
P18979 Justalakonin 528.1312 529.1358 247
P49160 924.4051 925.4092 247
P30313 Sufotidine 421.2175 422.2210 246
P42443 (20R)-3beta-hydroxy-D:C-friedoolean-7,9(11)-dien-29-oic acid 454.3412 455.3485 246

Explore by Gene

Search genes by gene ID, alias, description, or Arabidopsis ortholog information.

Gene ID Alias Description Arabidopsis ortholog Associated metabolites (overlap)
Glyma.20G109600 hypothetical protein AT3G14290:PAE2:20S proteasome alpha subunit E2__AT1G53850:PAE1:20S proteasome alpha subunit E1 464
Glyma.11G125600 hypothetical protein AT2G46200:AT2G46200:U11/U12 small nuclear ribonucleoprotein 463
Glyma.19G005200 hypothetical protein AT3G27640:AT3G27640:Transducin/WD40 repeat-like superfamily protein 463
Glyma.03G016700 hypothetical protein AT4G00740:QUA3:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 461
Glyma.04G063900 hypothetical protein NA 459
Glyma.03G021400 hypothetical protein AT2G45540:AT2G45540:WD-40 repeat family protein / beige-like protein 458
Glyma.16G117700 hypothetical protein NA 456
Glyma.03G242800 hypothetical protein AT4G08630:AT4G08630:fas-binding factor-like protein 454
Glyma.05G149300 hypothetical protein AT2G03870:EMB2816:Small nuclear ribonucleoprotein family protein 454
Glyma.16G161500 hypothetical protein NA 452