Soybean mGWAS DB

Explore metabolite–gene associations from soybean metabolome GWAS results. This database supports bidirectional navigation between metabolites and genes, with linked detail pages for association evidence and mass-based compound candidates.

How to explore the database →

SNP and gene associations use P < 10⁻¹⁰. Change threshold · Counts cover features with indexed GWAS data; — means unavailable.

Explore by Metabolite

Search metabolites by metabolite ID or candidate names, formulas or compound IDs.

Metabolite ID Candidate annotation Deionized mass (Da) Average m/z Associated genes (overlap)
P16525 Isoginkgetin 7-O-beta-D-glucopyranoside 728.1731 729.1824 115
P19420 Homoneoharringtonine 549.2405 550.2453 115
P19653 750.2553 751.2633 115
P19780 Lappaol D 568.2302 569.2391 115
P20216 Histidylhistidine 292.1273 293.1352 115
P21207 Dapriamicin A 511.1949 512.2013 115
P22565 Androstane-3,17-diol 17-sulfate 372.1984 373.2057 115
P22629 N-4-[2(R)-Amino-3-mercaptopropyl]amino-2-naphthylbenzoyl-(L)-leucine, TFA 465.2079 466.2159 115
P22895 FD 212 268.1299 269.1362 115
P23137 Fentrazamide 349.1306 350.1360 115

Explore by Gene

Search genes by gene ID, alias, description, or Arabidopsis ortholog information.

Gene ID Alias Description Arabidopsis ortholog Associated metabolites (overlap)
Glyma.20G109600 hypothetical protein AT3G14290:PAE2:20S proteasome alpha subunit E2__AT1G53850:PAE1:20S proteasome alpha subunit E1 464
Glyma.11G125600 hypothetical protein AT2G46200:AT2G46200:U11/U12 small nuclear ribonucleoprotein 463
Glyma.19G005200 hypothetical protein AT3G27640:AT3G27640:Transducin/WD40 repeat-like superfamily protein 463
Glyma.03G016700 hypothetical protein AT4G00740:QUA3:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 461
Glyma.04G063900 hypothetical protein NA 459
Glyma.03G021400 hypothetical protein AT2G45540:AT2G45540:WD-40 repeat family protein / beige-like protein 458
Glyma.16G117700 hypothetical protein NA 456
Glyma.03G242800 hypothetical protein AT4G08630:AT4G08630:fas-binding factor-like protein 454
Glyma.05G149300 hypothetical protein AT2G03870:EMB2816:Small nuclear ribonucleoprotein family protein 454
Glyma.16G161500 hypothetical protein NA 452