Soybean mGWAS DB

Explore metabolite–gene associations from soybean metabolome GWAS results. This database supports bidirectional navigation between metabolites and genes, with linked detail pages for association evidence and mass-based compound candidates.

How to explore the database →

SNP and gene associations use P < 10⁻¹⁰. Change threshold · Counts cover features with indexed GWAS data; — means unavailable.

Explore by Metabolite

Search metabolites by metabolite ID or candidate names, formulas or compound IDs.

Metabolite ID Candidate annotation Deionized mass (Da) Average m/z Associated genes (overlap)
P11240 6-Benzylaminopurine 225.1038 226.1090 123
P15609 2-Isopropylfuran 110.0718 111.0795 123
P15845 Nigrospoxydon C 294.0747 295.0816 123
P17541 17-Ethynyl-16-fluoroestradiol 314.1689 315.1765 123
P17713 939.2673 940.2706 123
P20071 Melochinone 331.1571 332.1663 123
P26120 1,2-dinonanoyl-sn-glycero-3-phosphocholine 537.3455 538.3528 123
P30440 2-Isopropylfuran 110.0717 111.0792 123
P32052 Zanamivir 332.1327 333.1402 123
P33021 7-O-Methyl-N-deacetylipecoside 535.2335 536.2382 123

Explore by Gene

Search genes by gene ID, alias, description, or Arabidopsis ortholog information.

Gene ID Alias Description Arabidopsis ortholog Associated metabolites (overlap)
Glyma.20G109600 hypothetical protein AT3G14290:PAE2:20S proteasome alpha subunit E2__AT1G53850:PAE1:20S proteasome alpha subunit E1 464
Glyma.11G125600 hypothetical protein AT2G46200:AT2G46200:U11/U12 small nuclear ribonucleoprotein 463
Glyma.19G005200 hypothetical protein AT3G27640:AT3G27640:Transducin/WD40 repeat-like superfamily protein 463
Glyma.03G016700 hypothetical protein AT4G00740:QUA3:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 461
Glyma.04G063900 hypothetical protein NA 459
Glyma.03G021400 hypothetical protein AT2G45540:AT2G45540:WD-40 repeat family protein / beige-like protein 458
Glyma.16G117700 hypothetical protein NA 456
Glyma.03G242800 hypothetical protein AT4G08630:AT4G08630:fas-binding factor-like protein 454
Glyma.05G149300 hypothetical protein AT2G03870:EMB2816:Small nuclear ribonucleoprotein family protein 454
Glyma.16G161500 hypothetical protein NA 452