Soybean mGWAS DB

Explore metabolite–gene associations from soybean metabolome GWAS results. This database supports bidirectional navigation between metabolites and genes, with linked detail pages for association evidence and mass-based compound candidates.

How to explore the database →

SNP and gene associations use P < 10⁻¹⁰. Change threshold · Counts cover features with indexed GWAS data; — means unavailable.

Explore by Metabolite

Search metabolites by metabolite ID or candidate names, formulas or compound IDs.

Metabolite ID Candidate annotation Deionized mass (Da) Average m/z Associated genes (overlap)
P55446 1-(4-Hydroxyphenyl)-4,8-dimethyl-10-(2,6,6-trimethylcyclohexen-1-yl)deca-3,5,7,9-tetraen-2-one 390.2571 391.2651 —
P55448 Myrrhanol A 460.3838 461.3899 —
P55449 1-(3,4-Dichlorophenyl)urea 203.9825 204.9901 —
P55452 Flunixin 296.0745 297.0820 —
P55455 557.1670 558.1718 —
P55456 Apigenin 7-(2''-acetyl-6''-methylglucuronide) 502.1027 503.1103 —
P55458 Rosmadial 344.1611 345.1687 —
P55459 7-Methyl-6,8-bis(methylthio)pyrrolo(1,2-a)pyrazine 224.0408 225.0488 —
P55460 Propyl 1-(propylsulfinyl)propyl disulfide 240.0673 241.0731 —
P55461 Losmapimod 383.1986 384.2078 —

Explore by Gene

Search genes by gene ID, alias, description, or Arabidopsis ortholog information.

Gene ID Alias Description Arabidopsis ortholog Associated metabolites (overlap)
Glyma.09G255700 hypothetical protein AT1G01540:AT1G01540:Protein kinase superfamily protein__AT4G01330:AT4G01330:Protein kinase superfamily protein 507
Glyma.12G054700 hypothetical protein AT3G45140:LOX2:lipoxygenase 2 506
Glyma.17G251200 hypothetical protein NA 505
Glyma.06G275800 hypothetical protein AT2G30980:SKdZeta:SHAGGY-related protein kinase dZeta 497
Glyma.06G130300 hypothetical protein AT5G53080:AT5G53080:Tetratricopeptide repeat (TPR)-like superfamily protein 496
Glyma.06G200200 hypothetical protein NA 490
Glyma.18G106600 hypothetical protein NA 490
Glyma.10G028700 hypothetical protein AT1G03090:MCCA:methylcrotonyl-CoA carboxylase alpha chain 487
Glyma.16G144100 hypothetical protein NA 487
Glyma.18G099600 hypothetical protein AT4G27040:VPS22:EAP30/Vps36 family protein 487