Soybean mGWAS DB

Explore metabolite–gene associations from soybean metabolome GWAS results. This database supports bidirectional navigation between metabolites and genes, with linked detail pages for association evidence and mass-based compound candidates.

How to explore the database →

SNP and gene associations use P < 10⁻¹⁰. Change threshold · Counts cover features with indexed GWAS data; — means unavailable.

Explore by Metabolite

Search metabolites by metabolite ID or candidate names, formulas or compound IDs.

Open full metabolite explorer

Metabolite ID	Candidate annotation	Deionized mass (Da)	Average m/z	Associated genes (overlap)
P05765	Lycomarasmine B	277.0881	278.0973	165
P12117	Nutlin-3	580.1626	581.1677	165
P18034		276.1936	277.2003	165
P21529	Hosloppin	392.0948	393.1016	165
P22253		360.2841	361.2899	165
P22299	Pubescenine	495.2821	496.2855	165
P29912	O-Phosphoviomycin	765.2905	766.2988	165
P42723	CJ 15208	577.2763	578.2781	165
P45180		199.1326	200.1399	165
P45663	Kopsaporine	426.1785	427.1816	165

Explore by Gene

Search genes by gene ID, alias, description, or Arabidopsis ortholog information.

Open full gene explorer

Gene ID	Description	Arabidopsis ortholog	Associated metabolites (overlap)
Glyma.07G075000	hypothetical protein	AT5G60990:AT5G60990:DEA(D/H)-box RNA helicase family protein	521
Glyma.07G075300	hypothetical protein	NA	521
Glyma.16G113000	hypothetical protein	NA	521
Glyma.08G150100	hypothetical protein	AT2G44450:BGLU15:beta glucosidase 15	520
Glyma.07G018100	hypothetical protein	NA	515
Glyma.08G122600	hypothetical protein	NA	513
Glyma.16G003000	hypothetical protein	AT1G58025:AT1G58025:DNA-binding bromodomain-containing protein	512
Glyma.16G003200	hypothetical protein	NA	512
Glyma.07G018300	hypothetical protein	AT3G27750:EMB3123:PPR containing protein	510
Glyma.06G079400	hypothetical protein	NA	508