Soybean mGWAS DB

Explore metabolite–gene associations from soybean metabolome GWAS results. This database supports bidirectional navigation between metabolites and genes, with linked detail pages for association evidence and mass-based compound candidates.

How to explore the database →

SNP and gene associations use P < 10⁻¹⁰. Change threshold · Counts cover features with indexed GWAS data; — means unavailable.

Explore by Metabolite

Search metabolites by metabolite ID or candidate names, formulas or compound IDs.

Open full metabolite explorer

Metabolite ID	Candidate annotation	Deionized mass (Da)	Average m/z	Associated genes (overlap)
P55548		347.3085	348.3149	—
P55550	16-Methylheptadecanoylcarnitine	427.3718	428.3783	—
P55555	Pro-Pro-Phe	359.1790	360.1862	—
P55556		273.9162	274.9238	—
P55557		177.9525	178.9596	—
P55558		127.9526	128.9604	—
P55560	Evodone	164.0824	329.1720	—
P55562	Isomytiloxanthin	598.4011	599.4090	—
P55563		108.0105	109.0176	—
P55565	(-)-Tetrodecamycin	334.1416	335.1503	—

Explore by Gene

Search genes by gene ID, alias, description, or Arabidopsis ortholog information.

Open full gene explorer

Gene ID	Description	Arabidopsis ortholog	Associated metabolites (overlap)
Glyma.03G018600	hypothetical protein	AT2G45695:AT2G45695:Ubiquitin related modifier 1	641
Glyma.01G121400	hypothetical protein	AT5G01400:ESP4:HEAT repeat-containing protein	639
Glyma.06G019800	hypothetical protein	NA	637
Glyma.14G201800	hypothetical protein	AT5G58390:AT5G58390:Peroxidase superfamily protein	633
Glyma.19G029800	hypothetical protein	NA	625
Glyma.15G009800	hypothetical protein	NA	621
Glyma.06G201700	hypothetical protein	NA	615
Glyma.16G111400	hypothetical protein	AT4G35510:AT4G35510:PHD finger-like protein	615
Glyma.08G338900	hypothetical protein	NA	609
Glyma.16G196400	hypothetical protein	AT5G07270:XBAT33:uncharacterized protein	608