Soybean mGWAS DB

Explore metabolite–gene associations from soybean metabolome GWAS results. This database supports bidirectional navigation between metabolites and genes, with linked detail pages for association evidence and mass-based compound candidates.

How to explore the database →

SNP and gene associations use P < 10⁻¹⁰. Change threshold · Counts cover features with indexed GWAS data; — means unavailable.

Explore by Metabolite

Search metabolites by metabolite ID or candidate names, formulas or compound IDs.

Metabolite ID Candidate annotation Deionized mass (Da) Average m/z Associated genes (overlap)
P28918 Trienomycin E 610.3503 611.3588 126
P29106 PGP(PGE2/22:5(7Z,10Z,13Z,16Z,19Z)) 972.4792 973.4887 126
P29714 Saframycin C 567.2128 568.2235 126
P30517 Ethambutol 204.1848 205.1925 126
P33934 1-(1-Phenylcyclohexyl)-4-hydroxypiperidine 259.1929 260.1990 126
P34061 p-Formylbenzoic acid 150.0310 151.0378 126
P34329 Rhopaladin B 370.1112 371.1158 126
P34873 (R)-2-Methylimino-1-phenylpropan-1-ol 163.0982 164.1054 126
P35765 Foetidissimoside A 1058.5215 1059.5351 126
P42290 446.1690 447.1777 126

Explore by Gene

Search genes by gene ID, alias, description, or Arabidopsis ortholog information.

Gene ID Alias Description Arabidopsis ortholog Associated metabolites (overlap)
Glyma.08G210300 hypothetical protein NA 707
Glyma.10G238200 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 706
Glyma.12G186200 hypothetical protein AT3G44350:NAC061:NAC domain containing protein 61 705
Glyma.14G213400 hypothetical protein NA 705
Glyma.09G253900 hypothetical protein NA 700
Glyma.09G253800 hypothetical protein NA 699
Glyma.04G190200 hypothetical protein AT3G48330:PIMT1:protein-l-isoaspartate methyltransferase 1 692
Glyma.09G186700 hypothetical protein AT1G20050:HYD1:C-8,7 sterol isomerase 692
Glyma.20G120200 hypothetical protein NA 692
Glyma.03G019600 hypothetical protein AT2G45640:SAP18:SIN3 associated polypeptide P18 691