Soybean mGWAS DB

Explore metabolite–gene associations from soybean metabolome GWAS results. This database supports bidirectional navigation between metabolites and genes, with linked detail pages for association evidence and mass-based compound candidates.

How to explore the database →

SNP and gene associations use P < 10⁻¹⁰. Change threshold · Counts cover features with indexed GWAS data; — means unavailable.

Explore by Metabolite

Search metabolites by metabolite ID or candidate names, formulas or compound IDs.

Metabolite ID Candidate annotation Deionized mass (Da) Average m/z Associated genes (overlap)
P52734 Bialaphos 323.1245 324.1307 101
P01015 Oxaburimamide 214.0929 215.1009 100
P01041 482.0337 483.0418 100
P02048 L-Glutamyl 5-phosphate 227.0189 228.0268 100
P04048 4-Nitroquinoline N-oxide 190.0393 191.0467 100
P04164 Elinafide 520.2115 521.2193 100
P08546 169.0440 170.0507 100
P09036 Delmadinone 360.1485 361.1545 100
P09294 2-Methoxybenzoic acid 152.0462 153.0536 100
P10487 Quercetin 3-(6'''-sinapylglucosyl)(1->2)-galactoside 832.2090 833.2224 100

Explore by Gene

Search genes by gene ID, alias, description, or Arabidopsis ortholog information.

Gene ID Alias Description Arabidopsis ortholog Associated metabolites (overlap)
Glyma.18G201700 hypothetical protein NA 738
Glyma.05G164700 hypothetical protein NA 731
Glyma.16G106300 hypothetical protein AT5G23900:AT5G23900:Ribosomal protein L13e family protein 730
Glyma.08G119300 hypothetical protein AT1G29330:ERD2:ER lumen protein retaining receptor family protein 729
Glyma.17G218600 hypothetical protein NA 719
Glyma.20G107500 hypothetical protein AT2G16910:AMS:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 718
Glyma.17G218700 hypothetical protein NA 716
Glyma.19G011900 hypothetical protein AT3G28140:AT3G28140:RNA ligase/cyclic nucleotide phosphodiesterase family protein__AT5G40190:AT5G40190:RNA ligase/cyclic nucleotide phosphodiesterase family protein 714
Glyma.09G270400 hypothetical protein NA 710
Glyma.08G210200 hypothetical protein NA 707