Soybean mGWAS DB

Explore metabolite–gene associations from soybean metabolome GWAS results. This database supports bidirectional navigation between metabolites and genes, with linked detail pages for association evidence and mass-based compound candidates.

How to explore the database →

SNP and gene associations use P < 10⁻¹⁰. Change threshold · Counts cover features with indexed GWAS data; — means unavailable.

Explore by Metabolite

Search metabolites by metabolite ID or candidate names, formulas or compound IDs.

Metabolite ID Candidate annotation Deionized mass (Da) Average m/z Associated genes (overlap)
P18070 Cymbidine A 949.4154 950.4239 236
P25621 Pseudoanisatin 298.1384 299.1467 236
P47300 534.7868 535.7927 236
P31222 Sufotidine 421.2096 422.2177 235
P03976 Dilmapimod 456.1404 457.1517 234
P53033 7-Oxononane-1,1,9-tricarbaldehyde 226.1222 227.1285 234
P05631 Trimethyl orthoacetate 120.0775 121.0848 233
P13790 317.1926 318.1997 233
P23295 3beta-(4-Iodophenyl)tropan-2beta-carboxylic acid isopropyl ester 413.0800 414.0838 233
P11101 L-beta-aspartyl-L-phenylalanine 280.1044 281.1122 231

Explore by Gene

Search genes by gene ID, alias, description, or Arabidopsis ortholog information.

Gene ID Alias Description Arabidopsis ortholog Associated metabolites (overlap)
Glyma.06G098900 hypothetical protein AT1G12680:PEPKR2:phosphoenolpyruvate carboxylase-related kinase 2 12
Glyma.06G114700 hypothetical protein AT1G77510:PDIL1-2:PDI-like 1-2 12
Glyma.06G150700 hypothetical protein AT1G49180:AT1G49180:protein kinase family protein 12
Glyma.06G179700 hypothetical protein NA 12
Glyma.06G283800 hypothetical protein AT2G31110:AT2G31110:trichome birefringence-like protein (DUF828)__AT2G42570:TBL39:TRICHOME BIREFRINGENCE-LIKE 39 12
Glyma.06G313800 hypothetical protein AT4G22900:AT4G22900:transmembrane protein, putative (DUF1191) 12
Glyma.06G320000 hypothetical protein AT1G05740:AT1G05740:FAM136A-like protein (DUF842) 12
Glyma.06G320800 IF7GT6 isoflavone 7-O-glucosyltransferase UGT6 NA 12
Glyma.07G057600 hypothetical protein AT1G01430:TBL25:TRICHOME BIREFRINGENCE-LIKE 25 12
Glyma.07G058400 hypothetical protein AT3G25500:AFH1:formin homology 1 12