Soybean mGWAS DB

Explore metabolite–gene associations from soybean metabolome GWAS results. This database supports bidirectional navigation between metabolites and genes, with linked detail pages for association evidence and mass-based compound candidates.

How to explore the database →

SNP and gene associations use P < 10⁻¹⁰. Change threshold · Counts cover features with indexed GWAS data; — means unavailable.

Explore by Metabolite

Search metabolites by metabolite ID or candidate names, formulas or compound IDs.

Metabolite ID Candidate annotation Deionized mass (Da) Average m/z Associated genes (overlap)
P11263 Psilostachyin C 264.1332 265.1404 224
P14345 Levetiracetam 170.1025 171.1105 224
P17555 Latrunculin C 397.1929 398.2009 224
P42432 Phthalsaurediethylhexylester 306.1820 613.3715 224
P40215 CDP-DG(i-18:0/18:2(9Z,11Z)) 1005.5413 1006.5526 223
P07094 5-(Methoxymethyl)-1H-pyrrole-2-carbaldehyde 139.0620 140.0688 222
P38156 Montanastatin 740.4093 741.4144 222
P41025 CDP-DG(i-15:0/20:4(5Z,8Z,11Z,13E)+=O(15)) 1001.4851 1002.4923 222
P06065 4-Toluenesulfonamide 171.0341 172.0404 221
P13789 (2S,3S)-3-Hydroxyasparagine 148.0485 149.0561 221

Explore by Gene

Search genes by gene ID, alias, description, or Arabidopsis ortholog information.

Gene ID Alias Description Arabidopsis ortholog Associated metabolites (overlap)
Glyma.06G098900 hypothetical protein AT1G12680:PEPKR2:phosphoenolpyruvate carboxylase-related kinase 2 12
Glyma.06G114700 hypothetical protein AT1G77510:PDIL1-2:PDI-like 1-2 12
Glyma.06G150700 hypothetical protein AT1G49180:AT1G49180:protein kinase family protein 12
Glyma.06G179700 hypothetical protein NA 12
Glyma.06G283800 hypothetical protein AT2G31110:AT2G31110:trichome birefringence-like protein (DUF828)__AT2G42570:TBL39:TRICHOME BIREFRINGENCE-LIKE 39 12
Glyma.06G313800 hypothetical protein AT4G22900:AT4G22900:transmembrane protein, putative (DUF1191) 12
Glyma.06G320000 hypothetical protein AT1G05740:AT1G05740:FAM136A-like protein (DUF842) 12
Glyma.06G320800 IF7GT6 isoflavone 7-O-glucosyltransferase UGT6 NA 12
Glyma.07G057600 hypothetical protein AT1G01430:TBL25:TRICHOME BIREFRINGENCE-LIKE 25 12
Glyma.07G058400 hypothetical protein AT3G25500:AFH1:formin homology 1 12