Soybean mGWAS DB

Explore metabolite–gene associations from soybean metabolome GWAS results. This database supports bidirectional navigation between metabolites and genes, with linked detail pages for association evidence and mass-based compound candidates.

How to explore the database →

SNP and gene associations use P < 10⁻¹⁰. Change threshold · Counts cover features with indexed GWAS data; — means unavailable.

Explore by Metabolite

Search metabolites by metabolite ID or candidate names, formulas or compound IDs.

Metabolite ID Candidate annotation Deionized mass (Da) Average m/z Associated genes (overlap)
P08589 Benzomalvin D 381.1494 382.1579 250
P23519 Lapathoside A 986.2755 987.2789 250
P44926 Eunicellin 522.2769 523.2852 250
P29538 DG(2:0/0:0/20:5(7Z,9Z,11E,13E,17Z)-3OH(5,6,15)) 466.2567 467.2613 249
P35069 1-hexadecanoyl-2-succinyl-sn-glycero-phosphocholine 595.3591 596.3657 249
P11244 Maculalactone K 532.1815 533.1890 248
P18979 Justalakonin 528.1312 529.1358 247
P49160 924.4051 925.4092 247
P30313 Sufotidine 421.2175 422.2210 246
P42443 (20R)-3beta-hydroxy-D:C-friedoolean-7,9(11)-dien-29-oic acid 454.3412 455.3485 246

Explore by Gene

Search genes by gene ID, alias, description, or Arabidopsis ortholog information.

Gene ID Alias Description Arabidopsis ortholog Associated metabolites (overlap)
Glyma.10G058200 PAL2.1 phenylalanine ammonia-lyase 2.1 AT3G53260:PAL2:phenylalanine ammonia-lyase 2__AT2G37040:PAL1:PHE ammonia lyase 1 14
Glyma.10G172400 hypothetical protein AT4G10570:UBP9:ubiquitin-specific protease 9__AT1G32850:UBP11:ubiquitin-specific protease 11 14
Glyma.10G194900 hypothetical protein NA 14
Glyma.10G212400 hypothetical protein AT3G12090:TET6:tetraspanin6 14
Glyma.11G109400 hypothetical protein AT4G28510:PHB1:prohibitin 1 14
Glyma.11G109500 hypothetical protein NA 14
Glyma.11G126800 hypothetical protein AT1G06050:AT1G06050:ENHANCED DISEASE RESISTANCE-like protein (DUF1336) 14
Glyma.12G014800 hypothetical protein AT4G27630:GTG2:GPCR-type G protein 2 14
Glyma.12G031300 hypothetical protein AT2G16660:AT2G16660:Major facilitator superfamily protein 14
Glyma.14G017600 hypothetical protein AT5G55280:FTSZ1-1:homolog of bacterial cytokinesis Z-ring protein FTSZ 1-1 14