Soybean mGWAS DB

Explore metabolite–gene associations from soybean metabolome GWAS results. This database supports bidirectional navigation between metabolites and genes, with linked detail pages for association evidence and mass-based compound candidates.

How to explore the database →

SNP and gene associations use P < 10⁻¹⁰. Change threshold · Counts cover features with indexed GWAS data; — means unavailable.

Explore by Metabolite

Search metabolites by metabolite ID or candidate names, formulas or compound IDs.

Metabolite ID Candidate annotation Deionized mass (Da) Average m/z Associated genes (overlap)
P24428 Talniflumate 414.0784 415.0855 205
P25466 Niazinin 343.1126 344.1185 205
P15762 Aristoloterpenate II 527.1950 528.2020 204
P03342 D-Alanyl-alanyl-poly(glycerolphosphate) 314.0858 315.0931 203
P05821 Pandangolide 3 362.1408 363.1478 203
P12578 4E,6E-undecenal 166.1341 167.1417 203
P14723 1-(9Z-octadecenoyl)-2-(5-oxo-7-carboxy-6E-heptenoyl)-sn-glycero-3-phosphoserine 691.3337 692.3416 203
P53229 Leurubicin 656.2476 657.2525 203
P13994 2-Methyl-1-hydroxypropyl-ThPP 496.0955 497.1062 202
P39176 Microtoenin C 941.5023 942.5093 202

Explore by Gene

Search genes by gene ID, alias, description, or Arabidopsis ortholog information.

Gene ID Alias Description Arabidopsis ortholog Associated metabolites (overlap)
Glyma.10G058200 PAL2.1 phenylalanine ammonia-lyase 2.1 AT3G53260:PAL2:phenylalanine ammonia-lyase 2__AT2G37040:PAL1:PHE ammonia lyase 1 14
Glyma.10G172400 hypothetical protein AT4G10570:UBP9:ubiquitin-specific protease 9__AT1G32850:UBP11:ubiquitin-specific protease 11 14
Glyma.10G194900 hypothetical protein NA 14
Glyma.10G212400 hypothetical protein AT3G12090:TET6:tetraspanin6 14
Glyma.11G109400 hypothetical protein AT4G28510:PHB1:prohibitin 1 14
Glyma.11G109500 hypothetical protein NA 14
Glyma.11G126800 hypothetical protein AT1G06050:AT1G06050:ENHANCED DISEASE RESISTANCE-like protein (DUF1336) 14
Glyma.12G014800 hypothetical protein AT4G27630:GTG2:GPCR-type G protein 2 14
Glyma.12G031300 hypothetical protein AT2G16660:AT2G16660:Major facilitator superfamily protein 14
Glyma.14G017600 hypothetical protein AT5G55280:FTSZ1-1:homolog of bacterial cytokinesis Z-ring protein FTSZ 1-1 14