Soybean mGWAS DB

Explore metabolite–gene associations from soybean metabolome GWAS results. This database supports bidirectional navigation between metabolites and genes, with linked detail pages for association evidence and mass-based compound candidates.

How to explore the database →

SNP and gene associations use P < 10⁻¹⁰. Change threshold · Counts cover features with indexed GWAS data; — means unavailable.

Explore by Metabolite

Search metabolites by metabolite ID or candidate names, formulas or compound IDs.

Metabolite ID Candidate annotation Deionized mass (Da) Average m/z Associated genes (overlap)
P34126 1-Nitrohydroxyphenyl-N-benzoylalanine 330.0842 331.0929 121
P34165 Manilamine 282.1752 283.1828 121
P35261 valeryl 4-hydroxy valsartan 535.2720 536.2794 121
P36685 S-Formylmycothiol 514.1437 515.1516 121
P37725 PE(20:5(7Z,9Z,11E,13E,17Z)-3OH(5,6,15)/22:5(4Z,7Z,10Z,13Z,16Z)) 859.4946 860.4952 121
P40969 adipamide 144.0918 145.1001 121
P43405 Scutebarbatine H 469.2041 470.2102 121
P46239 Dymacrin D 438.3476 439.3533 121
P47087 N-(1,3-Dimethylbutyl)-N'-phenyl-p-phenylenediamine 268.1979 269.2062 121
P50181 Avermectin B1b monosaccharide 714.4022 715.4140 121

Explore by Gene

Search genes by gene ID, alias, description, or Arabidopsis ortholog information.

Gene ID Alias Description Arabidopsis ortholog Associated metabolites (overlap)
Glyma.05G224500 hypothetical protein NA 836
Glyma.13G161900 PAP25 purple acid phosphatase AT5G34850:PAP26:purple acid phosphatase 26 836
Glyma.16G115400 hypothetical protein NA 833
Glyma.13G181100 hypothetical protein AT2G47960:AT2G47960:trafficking protein particle complex subunit-like protein 829
Glyma.09G270500 hypothetical protein AT1G09780:iPGAM1:Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent 821
Glyma.11G095100 hypothetical protein NA 821
Glyma.08G114700 hypothetical protein AT3G13600:AT3G13600:calmodulin-binding family protein 817
Glyma.09G249500 hypothetical protein NA 815
Glyma.16G207900 hypothetical protein AT5G08450:AT5G08450:zinc finger CCCH domain protein 802
Glyma.18G196200 hypothetical protein AT3G09100:AT3G09100:mRNA capping enzyme family protein 800