Soybean mGWAS DB

Explore metabolite–gene associations from soybean metabolome GWAS results. This database supports bidirectional navigation between metabolites and genes, with linked detail pages for association evidence and mass-based compound candidates.

How to explore the database →

SNP and gene associations use P < 10⁻¹⁰. Change threshold · Counts cover features with indexed GWAS data; — means unavailable.

Explore by Metabolite

Search metabolites by metabolite ID or candidate names, formulas or compound IDs.

Metabolite ID Candidate annotation Deionized mass (Da) Average m/z Associated genes (overlap)
P55548 347.3085 348.3149 —
P55550 16-Methylheptadecanoylcarnitine 427.3718 428.3783 —
P55555 Pro-Pro-Phe 359.1790 360.1862 —
P55556 273.9162 274.9238 —
P55557 177.9525 178.9596 —
P55558 127.9526 128.9604 —
P55560 Evodone 164.0824 329.1720 —
P55562 Isomytiloxanthin 598.4011 599.4090 —
P55563 108.0105 109.0176 —
P55565 (-)-Tetrodecamycin 334.1416 335.1503 —

Explore by Gene

Search genes by gene ID, alias, description, or Arabidopsis ortholog information.

Gene ID Alias Description Arabidopsis ortholog Associated metabolites (overlap)
Glyma.07G087500 hypothetical protein AT3G24503:ALDH2C4:aldehyde dehydrogenase 2C4 15
Glyma.07G129400 hypothetical protein AT3G02370:AT3G02370:tRNA-splicing endonuclease subunit__AT3G57360:AT3G57360:tRNA-splicing endonuclease subunit 15
Glyma.08G104000 hypothetical protein NA 15
Glyma.08G146300 hypothetical protein AT5G09820:AT5G09820:Plastid-lipid associated protein PAP / fibrillin family protein 15
Glyma.08G299800 hypothetical protein NA 15
Glyma.08G311600 hypothetical protein NA 15
Glyma.09G234200 hypothetical protein NA 15
Glyma.13G065700 hypothetical protein AT5G52340:EXO70A2:exocyst subunit exo70 family protein A2 15
Glyma.13G193900 hypothetical protein NA 15
Glyma.14G034100 hypothetical protein NA 15